View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_18 (Length: 514)
Name: NF1274_low_18
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 48 - 501
Target Start/End: Original strand, 43436879 - 43437332
Alignment:
| Q |
48 |
tttttcggaaaaatttgtctcttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatactaataacttgg |
147 |
Q |
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| T |
43436879 |
tttttcggaaaaatttgtctcttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatattaataacttgg |
43436978 |
T |
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| Q |
148 |
gagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctattttt |
247 |
Q |
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| T |
43436979 |
gagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctattttt |
43437078 |
T |
|
| Q |
248 |
cttaatatgcgtgaaaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaactggtacatcagatct |
347 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43437079 |
cttaatatgcgtgaaaatcgcaaaaggggcttataataaatgagagaggtaataaaggaaatactaacaacaacgaatcatcaacaggtacatcagatct |
43437178 |
T |
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| Q |
348 |
ggaatcaacatctccatcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttct |
447 |
Q |
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| T |
43437179 |
ggaatcaacatctccatcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttct |
43437278 |
T |
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| Q |
448 |
ttccacgctatatttcccagtcctgcatccgcaaccctggtatttgctgcagaa |
501 |
Q |
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| T |
43437279 |
ttccacgctatatttcccagtcctgcatccgcaaccctggtatttgctgcagaa |
43437332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 133 - 466
Target Start/End: Original strand, 13827361 - 13827683
Alignment:
| Q |
133 |
atactaataacttgggagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaat |
232 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| |||| |||| || |||||| | ||||||| ||||| ||| ||| ||| |
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| T |
13827361 |
atactaataacttgggagacaagaagttagagttgaacacatcatctgtatataa-----------atgagcctctatatatgaaatggacacattgaat |
13827449 |
T |
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| Q |
233 |
acattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaac |
332 |
Q |
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| T |
13827450 |
acattatctacttttcttgatatatgtgaaaattggaaaaggggcatataataaataacagagatagtaaaggaaatactcacaacaatgaatcatcagc |
13827549 |
T |
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| Q |
333 |
tggtacatcagatctggaatcaacatctccatcgcctctttcagaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccac |
432 |
Q |
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| T |
13827550 |
aaggacatcagatctgccatcaatatctccagcccctctttcagaagcagcttggcctgtgctcatcggagcagcattcttttctggcttcatcttccag |
13827649 |
T |
|
| Q |
433 |
gcgtcaactctttctttccacgctatatttccca |
466 |
Q |
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| T |
13827650 |
ccgtcaactctttctctccatgctacattgccca |
13827683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 3865824 - 3865880
Alignment:
| Q |
230 |
aatacattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataa |
286 |
Q |
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|||||| || ||||| |||||||||| |||||||||||||||| |||||||||||| |
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| T |
3865824 |
aatacactacctattcttcttaatatatgtgaaaattgcaaaagaggcttataataa |
3865880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 498
Target Start/End: Complemental strand, 9476728 - 9476594
Alignment:
| Q |
367 |
cctctttcagaagaagcttggcttgagctcattggaacagcattctttt---ccttcttcatcttccacgcgtcaactctttctttccacgctatatttc |
463 |
Q |
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||||||||||||| |||||| | || |||||||||| ||| |||||| | | | |||||| ||||| | ||||||||||||||||| |||| ||| | |
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| T |
9476728 |
cctctttcagaagtagcttgacctgtgctcattggagcagtattcttattatcgtgcttcattttccagccatcaactctttctttccaagctacattac |
9476629 |
T |
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| Q |
464 |
ccagtcctgcatccgcaaccctggtatttgctgca |
498 |
Q |
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| T |
9476628 |
ccaatcctggttcaacaaccctgatgtttgctgca |
9476594 |
T |
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