View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_20 (Length: 506)
Name: NF1274_low_20
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_20 |
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| [»] scaffold0419 (1 HSPs) |
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| [»] scaffold0277 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 43539079 - 43538581
Alignment:
| Q |
1 |
taattcatttatttatttttgacagttccataattcannnnnnngatatagcatattatggattcacattgctttcttaaacattattggcttgttttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
43539079 |
taattcatttatttatttttgacagttccataattcatttttttgatatagcatattatggattcacattgctttcttaaacattattgacgtgttttgg |
43538980 |
T |
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| Q |
101 |
tgttatatttagctttataaaaaagatattttacagttcatagttcatacacaacattgatgtaggtgtaatgtgaaatgcccacacacaaaaaagggtg |
200 |
Q |
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| T |
43538979 |
tgttatatttagctttataaaaaagatattttacagttcatagttcatacacaacattgatgtaggtgtaatgtgaaatgtccacacacaaaaaagggtg |
43538880 |
T |
|
| Q |
201 |
taatgtgttatactatgatttatggttaaacgtcgnnnnnnnncttctttttctgagaggtggttagacattgttgttgctcagtaattgaacacatcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43538879 |
taatgtgttatactatgatttatggttaaacgtcgttttttttcttctttttctgagaggtggttagacattgttgttgctcagtaattgaacacatcaa |
43538780 |
T |
|
| Q |
301 |
attataaaccattcctaatgttaactcttttcaatttctccctgtgcattacatgggttcataagactagcaagattaatactccaagatatcaaccacc |
400 |
Q |
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| T |
43538779 |
attataaaccattcctaatgttaactcttttcaatttctccctgtgcattacatgggttcataagactagcaagattaatactccaagatatcaaccacc |
43538680 |
T |
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| Q |
401 |
tatttcgaaattgattttctatactcgttatatcatgctggcctttaattagtcagtatcttgatttgtgataaagatagtaacctaccagtataatct |
499 |
Q |
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| T |
43538679 |
tatttcgaaattgattttctatactcgttatatcatgctggcctttaattagtcagtatcttgatttgtgataaagatagtaacctaccagtaaaatct |
43538581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 12444 - 12514
Alignment:
| Q |
50 |
agcatattatggattcacattgctttcttaaacattattggcttgttttggtgttatatttagctttataa |
120 |
Q |
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| T |
12444 |
agcatagtatggattcacattgctttcttaaacattattgacatgttttgatgttatgcttagctttataa |
12514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 8898 - 8828
Alignment:
| Q |
50 |
agcatattatggattcacattgctttcttaaacattattggcttgttttggtgttatatttagctttataa |
120 |
Q |
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| T |
8898 |
agcatagtatggattcacattgctttcttaaacattattgacatgttttgatgttatgcttagctttataa |
8828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 17648 - 17578
Alignment:
| Q |
50 |
agcatattatggattcacattgctttcttaaacattattggcttgttttggtgttatatttagctttataa |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | ||||||| | |||| |||||||||||| |
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| T |
17648 |
agcatagtatggattcacattgctttcttaaacattattgacatgttttgatattatgcttagctttataa |
17578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 28777400 - 28777468
Alignment:
| Q |
55 |
attatggattcacattgctttcttaaacattattggcttgttttggtgttatatttagctttataaaaa |
123 |
Q |
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| T |
28777400 |
attatggtttcacattgctttcttaaacattattgacatgttttgatgttatgcttaactttataaaaa |
28777468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 28799112 - 28799172
Alignment:
| Q |
63 |
ttcacattgctttcttaaacattattggcttgttttggtgttatatttagctttataaaaa |
123 |
Q |
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| T |
28799112 |
ttcacattgctttcttaaacattattgacatgttttgatgttatgcttaactttataaaaa |
28799172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 35045642 - 35045605
Alignment:
| Q |
271 |
ttgttgttgctcagtaattgaacacatcaaattataaa |
308 |
Q |
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| T |
35045642 |
ttgttgttgctcaataattgaacacaacaaattataaa |
35045605 |
T |
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