View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_23 (Length: 489)
Name: NF1274_low_23
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 158 - 453
Target Start/End: Original strand, 41569842 - 41570137
Alignment:
| Q |
158 |
ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcccctattcttggttatgtaaacaaa |
257 |
Q |
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| T |
41569842 |
ttgttataatttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagtgagagtgaattctcttcccctattcttggttatgtaagcaaa |
41569941 |
T |
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| Q |
258 |
tttctcatggaagatgatgacatagaggaagactacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttc |
357 |
Q |
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| T |
41569942 |
tttctcatggaagatgatgacatagaggaagactacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttc |
41570041 |
T |
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| Q |
358 |
tcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
453 |
Q |
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| T |
41570042 |
tcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
41570137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 177 - 453
Target Start/End: Original strand, 41556155 - 41556440
Alignment:
| Q |
177 |
atggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcccctat---------tcttggttatgtaaacaaatttctcatgg |
267 |
Q |
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| T |
41556155 |
atggacaaaagagttgttggtccacaccatgaacatagtgagagtgaattctcttccactatttccactattcttggttttataaacaaatttctcatgg |
41556254 |
T |
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| Q |
268 |
aagatgatgacatagaggaagactacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaaga |
367 |
Q |
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| T |
41556255 |
aagatgatgacatagaggaagactacaatatgttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaaga |
41556354 |
T |
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| Q |
368 |
agactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
453 |
Q |
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| T |
41556355 |
agactttgaaaaagaatacactatgttccaagattcttttgctcttcaactcactgagaaatcatttcatgatgttattgttcaca |
41556440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 168 - 453
Target Start/End: Original strand, 41588797 - 41589082
Alignment:
| Q |
168 |
ttgttgtaaatggacaaaagaattgttgattcacaccatgaacaaagagagagtgaattctcttcccctattcttggttatgtaaacaaatttctcatgg |
267 |
Q |
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| T |
41588797 |
ttgttatagatggacaaaggagttgttgatccactccatgaacaaagtaagagtgaattcacttccactgttcttggttttataaacaaatttctcatgg |
41588896 |
T |
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| Q |
268 |
aagatgatgacatagaggaagactacaatatgttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaaga |
367 |
Q |
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| T |
41588897 |
aagatgatgactcagaggaagactacaatatgttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaaga |
41588996 |
T |
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| Q |
368 |
agactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
453 |
Q |
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| T |
41588997 |
agactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
41589082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 41569673 - 41569804
Alignment:
| Q |
30 |
attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa |
129 |
Q |
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| T |
41569673 |
attggacacggttgatacattagtacacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatcaa |
41569772 |
T |
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| Q |
130 |
caatattcttttacatcaaatccattcattgt |
161 |
Q |
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| T |
41569773 |
caatattcttttacatcaaatccattcattgt |
41569804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 41555984 - 41556081
Alignment:
| Q |
30 |
attggacacggttcatacattagtatacaccaaatcttctgaattcagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc |
127 |
Q |
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| T |
41555984 |
attggacacggttgatacattagtacacaccaaatcttctgaatttagccacatatataaatcaaccaaccatgttcaacctggcacaaaaacaaatc |
41556081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 356 - 453
Target Start/End: Original strand, 41579046 - 41579143
Alignment:
| Q |
356 |
tctcatggaagaagactttgaaaaagaatacactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
453 |
Q |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
41579143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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