View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_25 (Length: 446)

Name: NF1274_low_25
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_25
NF1274_low_25
[»] chr6 (37 HSPs)
chr6 (103-417)||(26143148-26143460)
chr6 (103-417)||(25538823-25539135)
chr6 (103-417)||(25580002-25580314)
chr6 (103-417)||(26056209-26056514)
chr6 (103-417)||(26076179-26076484)
chr6 (103-372)||(25511268-25511530)
chr6 (295-417)||(25482025-25482147)
chr6 (103-303)||(25483454-25483651)
chr6 (103-417)||(26646762-26647071)
chr6 (103-417)||(26752730-26753039)
chr6 (166-418)||(27337728-27337970)
chr6 (166-418)||(27398468-27398710)
chr6 (309-394)||(26802748-26802833)
chr6 (309-394)||(27592816-27592901)
chr6 (309-394)||(27677410-27677495)
chr6 (309-394)||(27679252-27679337)
chr6 (309-394)||(27706198-27706283)
chr6 (362-418)||(27214702-27214758)
chr6 (362-418)||(27234470-27234526)
chr6 (325-417)||(26656272-26656361)
chr6 (325-417)||(26762243-26762332)
chr6 (103-222)||(28781580-28781693)
chr6 (103-222)||(28786717-28786830)
chr6 (362-417)||(28781422-28781477)
chr6 (362-417)||(28786561-28786616)
chr6 (362-417)||(28792682-28792737)
chr6 (103-208)||(27214943-27215044)
chr6 (338-394)||(27698319-27698375)
chr6 (163-222)||(28792838-28792897)
chr6 (301-397)||(26884468-26884561)
chr6 (168-263)||(27427263-27427359)
chr6 (352-394)||(27718218-27718260)
chr6 (377-418)||(28098221-28098262)
chr6 (381-418)||(31284570-31284607)
chr6 (370-418)||(26617904-26617952)
chr6 (370-418)||(26723832-26723880)
chr6 (301-361)||(27530988-27531048)
[»] chr3 (1 HSPs)
chr3 (13-96)||(46252652-46252735)
[»] chr1 (2 HSPs)
chr1 (329-417)||(28127485-28127570)
chr1 (314-417)||(28164154-28164254)
[»] chr4 (6 HSPs)
chr4 (286-417)||(18679331-18679458)
chr4 (297-417)||(18699175-18699291)
chr4 (286-417)||(18731268-18731395)
chr4 (329-417)||(18723891-18723976)
chr4 (362-417)||(18655313-18655368)
chr4 (168-263)||(18074196-18074292)
[»] scaffold0419 (2 HSPs)
scaffold0419 (103-222)||(7966-8079)
scaffold0419 (364-417)||(7808-7861)
[»] scaffold0277 (3 HSPs)
scaffold0277 (103-222)||(13265-13378)
scaffold0277 (364-417)||(4522-4575)
scaffold0277 (364-417)||(13483-13536)
[»] scaffold0349 (2 HSPs)
scaffold0349 (352-394)||(3259-3301)
scaffold0349 (352-394)||(14195-14237)
[»] scaffold0003 (1 HSPs)
scaffold0003 (168-263)||(60004-60100)
[»] chr2 (1 HSPs)
chr2 (377-418)||(3279985-3280026)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 26143460 - 26143148
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| |||||||||    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26143460 aaacttgtattcatatctattcatgtccaata----agataaattagaaaatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 26143365  T
Q  203 tctaacttttttgacata--aataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26143364 tctaacttttttgacatataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtagattatttaggcataa 26143265  T
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26143264 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggat 26143165  T
Q  401 aagagctatcttccatt 417  Q
    |||||||||||||||||    
T  26143164 aagagctatcttccatt 26143148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 25539135 - 25538823
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| |||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25539135 aaacttgtattcatatctattcatgtccaata----agataagttagaacataaactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 25539040  T
Q  203 tctaacttttttgacata--aataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  25539039 tctaatttttttgacatataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagttttaagagtagattatttaggcataa 25538940  T
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 400  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25538939 aaattaatgaaataaaatatagaaaggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggat 25538840  T
Q  401 aagagctatcttccatt 417  Q
    |||||||||||||||||    
T  25538839 aagagctatcttccatt 25538823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 25580314 - 25580002
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  25580314 aaacttgtattcatatctattcgtgtccaata----agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaaaatattattcaat 25580219  T
Q  203 tctaacttttttgacataaa--taacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    |||| ||||||||| ||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| || |||||| ||||||||    
T  25580218 tctaccttttttgaaatataattaacttacacttgttttaaaaacattaatagaaaatctgttcctatttaagcttgaagattagattattgaggcataa 25580119  T
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 400  Q
     |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25580118 caattaaagaaataaaatatagaaaggaaaaagaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 25580019  T
Q  401 aagagctatcttccatt 417  Q
    |||||||||||||||||    
T  25580018 aagagctatcttccatt 25580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 26056514 - 26056209
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    ||||||| ||||| |||||||| |||||||||    || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26056514 aaacttgcattcagatctattcatgtccaata----aggtaagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaat 26056419  T
Q  203 tctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    |||||||||||||||  |||||||||||||||| ||||||||| |||| |||| ||||   | | | |||||||||| |||||| |||||||||||||||    
T  26056418 tctaacttttttgacatataaataacttacactagttttaaaaccattgatag-aaatccctccatgtttaagctttaagagtagattatttaggcataa 26056320  T
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 400  Q
    ||||||| |||||||||||||      ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26056319 aaattaaagaaataaaatata------aaaaacaagatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagt 26056226  T
Q  401 aagagctatcttccatt 417  Q
    |||||| ||||||||||    
T  26056225 aagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 26076484 - 26076179
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    ||||||| ||||| |||||||| |||||||||    || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26076484 aaacttgcattcagatctattcatgtccaata----aggtaagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaat 26076389  T
Q  203 tctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    |||||||||||||||  |||||||||||||||| ||||||||| |||| |||| ||||   | | | |||||||||| |||||| |||||||||||||||    
T  26076388 tctaacttttttgacatataaataacttacactagttttaaaaccattgatag-aaatccctccatgtttaagctttaagagtagattatttaggcataa 26076290  T
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggt 400  Q
    ||||||| |||||||||||||      ||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  26076289 aaattaaagaaataaaatata------aaaaacaagatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagt 26076196  T
Q  401 aagagctatcttccatt 417  Q
    |||||| ||||||||||    
T  26076195 aagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 103 - 372
Target Start/End: Complemental strand, 25511530 - 25511268
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    ||||||||||||| |||||||| |||||||||    || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  25511530 aaacttgtattcagatctattcatgtccaata----aggtaagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaat 25511435  T
Q  203 tctaacttttttgacataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataaaa 302  Q
    ||||| |||||| ||||  |||||||||||||||||||||| ||||||||| ||||   | | | |||||||||| |||||| |||||||||||| ||||    
T  25511434 tctaaatttttttacat--ataacttacacttgttttaaaaccattaatag-aaatcgctccatgtttaagctttaagagtagattatttaggcaaaaaa 25511338  T
Q  303 attaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataat 372  Q
    ||||| ||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  25511337 attaaagaaataaaatataaaaaagaaaaacaagatttaagtaaagtagggtacccatgaggactataat 25511268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 25482147 - 25482025
Alignment:
Q  295 gcataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  25482147 gcataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc 25482048  T
Q  395 ttgggtaagagctatcttccatt 417  Q
    ||| |||||||| ||||||||||    
T  25482047 ttgagtaagagccatcttccatt 25482025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 103 - 303
Target Start/End: Complemental strand, 25483651 - 25483454
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||| ||||||||||||| |||||||||    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||    
T  25483651 aaacttgtgttcatatctattcatgtccaata----agataagttagaacatacactaaaaccaaaatcatatccatgcattgagaatatatcatgcaat 25483556  T
Q  203 tctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtaaattatttaggcataa 300  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||||| ||||   | | | |||||||||| |||||| |||||||||||||||    
T  25483555 tctaacttttttgacatataaataacttacacttgttttaaaaccattaatag-aaatcgctccatgtttaagctttaagagtagattatttaggcataa 25483457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 26647071 - 26646762
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||| | |    ||||||||||| |||| ||| || |||| ||  ||||  |||||  ||||||||||||| || |    
T  26647071 aaacttgtattcatatctattcatgtcccaca----agataagttagtacatgcaccaacatcacaaatacattgatgtaccgagaatatattatacagt 26646976  T
Q  203 tctaacttttttgacata--aataacttacacttgttttaaaaacattaatagaaa-atgtgtt-cctatttaagctttgagagtaaattatttaggcat 298  Q
    ||||||| ||||||||||  ||||| ||| |||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||  | ||| | | || |     
T  26646975 tctaactcttttgacatataaataatttatacttgttt-aaaaacattaataaaaatatgtgtttcctatttaagctttaagatgagattttgt-ggaaa 26646878  T
Q  299 aaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgg 398  Q
    |||||||||  ||| |||||||| |||||||||||||| |||||||||||||||||||||   |||||||||||| || |||||||||||||||||||||    
T  26646877 aaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtaccc---aggactataatggtatccggacaagttagcagcttgg 26646781  T
Q  399 gtaagagctatcttccatt 417  Q
    || ||||| | ||||||||    
T  26646780 gtcagagccaacttccatt 26646762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 103 - 417
Target Start/End: Complemental strand, 26753039 - 26752730
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||| | |    ||||||||||| |||| ||| || |||| ||  ||||  |||||  ||||||||||||| || |    
T  26753039 aaacttgtattcatatctattcatgtcccaca----agataagttagtacatgcaccaacatcacaaatacattgatgtaccgagaatatattatacagt 26752944  T
Q  203 tctaacttttttgacata--aataacttacacttgttttaaaaacattaatagaaa-atgtgtt-cctatttaagctttgagagtaaattatttaggcat 298  Q
    ||||||| ||||||||||  ||||| ||| |||||||| ||||||||||||| ||| ||||||| |||||||||||||| |||  | ||| | | || |     
T  26752943 tctaactcttttgacatataaataatttatacttgttt-aaaaacattaataaaaatatgtgtttcctatttaagctttaagatgagattttgt-ggaaa 26752846  T
Q  299 aaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgg 398  Q
    |||||||||  ||| |||||||| |||||||||||||| |||||||||||||||||||||   |||||||||||| || |||||||||||||||||||||    
T  26752845 aaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtaccc---aggactataatggtatccggacaagttagcagcttgg 26752749  T
Q  399 gtaagagctatcttccatt 417  Q
    || ||||| | ||||||||    
T  26752748 gtcagagccaacttccatt 26752730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 166 - 418
Target Start/End: Original strand, 27337728 - 27337970
Alignment:
Q  166 aaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacataaataacttacacttgttttaaaaacattaatagaaaatgtg-ttc 264  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||       ||| || |||||||| |||||||| |||| ||||  || |||    
T  27337728 aaaatcacatccatgtattgacaatatattatacaattctaactgttttga-------aacatatacttgttt-aaaaacataaataaaaaacatgcttc 27337819  T
Q  265 ctatttaagctttgagagtaaattatttaggcataaaaattaatgaaat-aaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgag 363  Q
    || |||||||||| |||  | |||| |  || | | ||||||| ||||  |||||||| |||||||||| || | |||||||||||||||||||| |||     
T  27337820 ctttttaagctttaagatgagattaatggggaaaagaaattaaagaaaagaaaatataaaaaggaaaaataa-tattaagtaaagtggggtacccttga- 27337917  T
Q  364 gactataatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
      ||| |||| | |||||| ||||||||||||||||||||||| |||||||||||    
T  27337918 --ctaaaatggtggccggagaagttagcagcttgggtaagagccatcttccattt 27337970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 166 - 418
Target Start/End: Original strand, 27398468 - 27398710
Alignment:
Q  166 aaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacataaataacttacacttgttttaaaaacattaatagaaaatgtg-ttc 264  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||       ||| || |||||||| |||||||| |||| ||||  || |||    
T  27398468 aaaatcacatccatgtattgacaatatattatacaattctaactgttttga-------aacatatacttgttt-aaaaacataaataaaaaacatgcttc 27398559  T
Q  265 ctatttaagctttgagagtaaattatttaggcataaaaattaatgaaat-aaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgag 363  Q
    || |||||||||| |||  | |||| |  || | | ||||||| ||||  |||||||| |||||||||| || | |||||||||||||||||||| |||     
T  27398560 ctttttaagctttaagatgagattaatggggaaaagaaattaaagaaaagaaaatataaaaaggaaaaataa-tattaagtaaagtggggtacccttga- 27398657  T
Q  364 gactataatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
      ||| |||| | |||||| ||||||||||||||||||||||| |||||||||||    
T  27398658 --ctaaaatggtggccggagaagttagcagcttgggtaagagccatcttccattt 27398710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 26802833 - 26802748
Alignment:
Q  309 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    ||||||||||||| || ||||||| | | |||||||||||| ||||||| | ||||||||| ||| ||||||||||||||||||||    
T  26802833 gaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagc 26802748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 27592816 - 27592901
Alignment:
Q  309 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    ||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  27592816 gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 27592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 27677410 - 27677495
Alignment:
Q  309 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    ||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  27677410 gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 27677495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 27679337 - 27679252
Alignment:
Q  309 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    ||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  27679337 gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 27679252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 27706198 - 27706283
Alignment:
Q  309 gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    ||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  27706198 gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 27706283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 27214758 - 27214702
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccattt 27214702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 27234470 - 27234526
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccattt 27234526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 26656361 - 26656272
Alignment:
Q  325 aggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    |||||||||||| ||||||||||||||||||||| |   ||||| |||| ||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  26656361 aggaaaaacaagatttaagtaaagtggggtaccctt---gactacaatggtagccagacaagttggcagctttggtcagagccatcttccatt 26656272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 26762332 - 26762243
Alignment:
Q  325 aggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    |||||||||||| ||||||||||||||||||||| |   ||||| |||| ||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  26762332 aggaaaaacaagatttaagtaaagtggggtaccctt---gactacaatggtagccagacaagttggcagctttggtcagagccatcttccatt 26762243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 28781693 - 28781580
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||    |||||||||||||||| |  || || || |||| ||||||||||||||| | |||||||| ||| || |    
T  28781693 aaacttgtattcatatctattcatgtc----atataagataagttagtatgta-ac-aacatcacaatcacatccatgtactcagaatatagtatacatt 28781600  T
Q  203 tctaacttttttgacataaa 222  Q
    ||||||| ||||||||||||    
T  28781599 tctaactattttgacataaa 28781580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 28786830 - 28786717
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||    |||||||||||||||| |  || || || |||| ||||||||||||||| | |||||||| ||| || |    
T  28786830 aaacttgtattcatatctattcatgtc----atataagataagttagtatgta-ac-aacatcacaatcacatccatgtactcagaatatagtatacatt 28786737  T
Q  203 tctaacttttttgacataaa 222  Q
    ||||||| ||||||||||||    
T  28786736 tctaactattttgacataaa 28786717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 28781477 - 28781422
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 28781422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 28786616 - 28786561
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 28786561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 28792737 - 28792682
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 28792682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 27215044 - 27214943
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||| ||  |||||||||    |||||||||||  ||||||| || ||||| |||| ||||||||| ||||| | ||||||  |||    
T  27215044 aaacttgtattcatatctgttaatgtccaata----agataagttagtgcatacaccaacatcaatatcagatccatgtactgagattgtattatataat 27214949  T
Q  203 tctaac 208  Q
    ||||||    
T  27214948 tctaac 27214943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 27698319 - 27698375
Alignment:
Q  338 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    |||||||||||| |||||||   ||||||||| ||| ||||||||||||||||||||    
T  27698319 tttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagc 27698375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 28792897 - 28792838
Alignment:
Q  163 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacataaa 222  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| ||||||||||||    
T  28792897 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaa 28792838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 26884561 - 26884468
Alignment:
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttg 397  Q
    ||||||| |||| |||||||| ||| | |||| | | ||||||||||||||| |||||   | ||||| |||| |||||||||||||||||| ||||    
T  26884561 aaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggataccc---aagactaaaatggtagccggacaagttagcaacttg 26884468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 27427263 - 27427359
Alignment:
Q  168 aatcacatccatgtattgagaatatattatgcaattctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgtt 263  Q
    ||||||||||||||| | | |||||||||| || || ||||| |||||||  |||||||||| ||| ||| ||||||||||| |||| |||| |||||    
T  27427263 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattg-tttaaaaacataaataaaaaaggtgtt 27427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 27718218 - 27718260
Alignment:
Q  352 ggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  27718218 ggtacccaggaggactatcatggtagccggacaagttagcagc 27718260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 28098221 - 28098262
Alignment:
Q  377 gccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  28098221 gccggacaagttagctgcttggttaagagccatcttccattt 28098262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 31284607 - 31284570
Alignment:
Q  381 gacaagttagcagcttgggtaagagctatcttccattt 418  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  31284607 gacaagttagctgcttgagtaagagctatcttccattt 31284570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 26617952 - 26617904
Alignment:
Q  370 aatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    |||||||||| || ||||||  ||||||| |||||||||||||||||||    
T  26617952 aatgatagccagataagttataagcttggttaagagctatcttccattt 26617904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 26723880 - 26723832
Alignment:
Q  370 aatgatagccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    |||||||||| || ||||||  ||||||| |||||||||||||||||||    
T  26723880 aatgatagccagataagttataagcttggttaagagctatcttccattt 26723832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 27530988 - 27531048
Alignment:
Q  301 aaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatg 361  Q
    ||||||| |||| |||||||| || ||||||| | | ||||||||||||||| ||||||||    
T  27530988 aaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatg 27531048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 46252735 - 46252652
Alignment:
Q  13 aatatatgcacactccgcccattaccctaatttctaccctaaaaaattgatcaatcataaaatatcatttcattttaacacaat 96  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46252735 aatacatgcacactccgcccattaccctaatttctactctaaaaaattgatcaatcataaaatatcatttcattttaacacaat 46252652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 28127485 - 28127570
Alignment:
Q  329 aaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    |||||||| |||||||| ||| ||||||||    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  28127485 aaaacaagatttaagtatagtagggtaccct---ggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 28164154 - 28164254
Alignment:
Q  314 aaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttc 413  Q
    |||||||| | |||||||||||| ||||||||  ||  |||||||    ||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  28164154 aaaatataaagaggaaaaacaagatttaagtattgtaaggtaccct---ggactataatggtagccggacaagttagcagcttgggttagagctatcttc 28164250  T
Q  414 catt 417  Q
    ||||    
T  28164251 catt 28164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 18679331 - 18679458
Alignment:
Q  286 attatttaggcataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaa 385  Q
    |||||| ||| ||||| |||||  |||||||||  | ||||||||| ||||  |||||||||| || |||||||   |||||| |||| |||||||||||    
T  18679331 attattgaggaataaatattaaataaataaaatgcaaaaaggaaaa-caagaattaagtaaagaggagtaccca---ggactaaaatggtagccggacaa 18679426  T
Q  386 gttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||||||| ||| ||||||| ||||||||    
T  18679427 gttagcagcttcggtcagagctaacttccatt 18679458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 18699175 - 18699291
Alignment:
Q  297 ataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagctt 396  Q
    |||||||||||  |||||||||  | ||||||||| ||||  |||||||||| || |||||||   | |||| |||| ||||||||||||||||||||||    
T  18699175 ataaaaattaaataaataaaatgcaaaaaggaaaa-caagaattaagtaaagaggagtaccca---gaactaaaatggtagccggacaagttagcagctt 18699270  T
Q  397 gggtaagagctatcttccatt 417  Q
     ||| ||||||| ||||||||    
T  18699271 cggtcagagctaacttccatt 18699291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 18731268 - 18731395
Alignment:
Q  286 attatttaggcataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaa 385  Q
    |||||| ||| |||||||||||  |||||||||  | || |||||| ||||  |||||||||| || ||||||||||   ||| |||| |||||||||||    
T  18731268 attattgaggaataaaaattaaataaataaaatgcaaaatggaaaa-caagaattaagtaaagaggagtacccatga---ctaaaatggtagccggacaa 18731363  T
Q  386 gttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||||||| ||| ||||| | ||||||||    
T  18731364 gttagcagcttcggtcagagccaacttccatt 18731395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 18723891 - 18723976
Alignment:
Q  329 aaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||||  |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| ||| ||||| | ||||||||    
T  18723891 aaaacaagaattaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccatt 18723976  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 18655313 - 18655368
Alignment:
Q  362 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||||| |||| |||||||||||||||||||||| ||| ||||| | ||||||||    
T  18655313 aggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccatt 18655368  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 18074292 - 18074196
Alignment:
Q  168 aatcacatccatgtattgagaatatattatgcaattctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgtt 263  Q
    ||||||||||||||| | | |||||||||| || || ||||| |||||||  |||||||||| ||| ||| ||||||||||| |||| |||| |||||    
T  18074292 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattg-tttaaaaacataaataaaaaaggtgtt 18074196  T

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Target: scaffold0419 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 8079 - 7966
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||    |||||||||||||||| |  || || || |||| ||||||||||||||| | |||||||| ||| || |    
T  8079 aaacttgtattcatatctattcatgtc----atataagataagttagtatgta-ac-aacatcacaatcacatccatgtactcagaatatagtatacatt 7986  T
Q  203 tctaacttttttgacataaa 222  Q
    ||||||| ||||||||||||    
T  7985 tctaactattttgacataaa 7966  T

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Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 7861 - 7808
Alignment:
Q  364 gactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  7861 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 7808  T

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Target: scaffold0277 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 13265 - 13378
Alignment:
Q  103 aaacttgtattcatatctattcgtgtccaatatataagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaat 202  Q
    |||||||||||||||||||||| ||||    |||||||||||||||| |  || || || |||| ||||||||||||||| | |||||||| ||| || |    
T  13265 aaacttgtattcatatctattcatgtc----atataagataagttagtatgta-ac-aacatcacaatcacatccatgtactcagaatatagtatacatt 13358  T
Q  203 tctaacttttttgacataaa 222  Q
    ||||||| ||||||||||||    
T  13359 tctaactattttgacataaa 13378  T

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Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 4522 - 4575
Alignment:
Q  364 gactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  4522 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 4575  T

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Target: scaffold0277; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 13483 - 13536
Alignment:
Q  364 gactataatgatagccggacaagttagcagcttgggtaagagctatcttccatt 417  Q
    ||||| |||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  13483 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccatt 13536  T

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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 3259 - 3301
Alignment:
Q  352 ggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  3259 ggtacccaggaggactatcatggtagccggacaagttagcagc 3301  T

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Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 14195 - 14237
Alignment:
Q  352 ggtacccatgaggactataatgatagccggacaagttagcagc 394  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  14195 ggtacccaggaggactatcatggtagccggacaagttagcagc 14237  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 60100 - 60004
Alignment:
Q  168 aatcacatccatgtattgagaatatattatgcaattctaacttttttgac--ataaataacttacacttgttttaaaaacattaatagaaaatgtgtt 263  Q
    ||||||||||||||| | | |||||||||| || || ||||| |||||||  |||||||||| ||| ||| ||||||||||| |||| |||| |||||    
T  60100 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattg-tttaaaaacataaataaaaaaggtgtt 60004  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 3280026 - 3279985
Alignment:
Q  377 gccggacaagttagcagcttgggtaagagctatcttccattt 418  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  3280026 gccggacaagttagctgcttggttaagagccatcttccattt 3279985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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