View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_26 (Length: 443)
Name: NF1274_low_26
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 249505 - 249103
Alignment:
| Q |
9 |
caacaatatatacataatatggtagcagctaattttgtcaaagtgcttgattccaatattccacatggatccaattggtttcttccttcttctgacatct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249505 |
caacaatatatacataatatggtagcagctaattttgtcaaagtgcttgattccaatattccacatggatccaattggtttcttccttcttctgacatct |
249406 |
T |
|
| Q |
109 |
ctgctgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatgcctgctcaaccggcactt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249405 |
ctgctgttcagttatccatttgttctcattgctcaatctcccacaaccactatcagtgttgagggaattgtttattgtgatgcctgctcaaccggcactt |
249306 |
T |
|
| Q |
209 |
tctctaaacacagttatctcttgccaggtatgtatgcatgtatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtca |
308 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249305 |
tctctaaacacagttatctcttgccaggtatgt----atgtatgtaccaagtaccttgttctttctcatgcaatatacacatggttattatattcagtca |
249210 |
T |
|
| Q |
309 |
cttttattttcttaaatcattactagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaat |
408 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
249209 |
cttttattttcttaaatcattaccagtgtctatgtgtatgtgttagtgtttggcgtctatgtctgaactttatatatagattataagcaaatgaatgaat |
249110 |
T |
|
| Q |
409 |
tgattat |
415 |
Q |
| |
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||||||| |
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| T |
249109 |
tgattat |
249103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 17105300 - 17105255
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
345 |
Q |
| |
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||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
17105300 |
attcaatcacttttattttcttaaattattattagtgtctatgtgt |
17105255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 26473302 - 26473347
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgt |
345 |
Q |
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|||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
26473302 |
attcagacacttttattttcttaaactattacaagtgtctatgtgt |
26473347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 28090409 - 28090460
Alignment:
| Q |
300 |
attcagtcacttttattttcttaaatcattactagtgtctatgtgtatgtgt |
351 |
Q |
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|||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
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| T |
28090409 |
attcagtcacttttattttcttaaattgttactagtgtgtgtgtgtgtgtgt |
28090460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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