View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_3 (Length: 802)
Name: NF1274_low_3
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 362 - 707
Target Start/End: Original strand, 28240653 - 28241003
Alignment:
| Q |
362 |
tagaagggatgt-gcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcggatttggtcacctaaaaatgagtttgcctttgataacaaa |
460 |
Q |
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| T |
28240653 |
tagaagggatgttgcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcgtatttggtcacctcaaaatgagtttgcctttgataacaaa |
28240752 |
T |
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| Q |
461 |
actcataccagtggcagcataattcggcaagtggagagtaaatttggtcaatgagatccacgttactatggtggaatgcactcctataagccctcaacta |
560 |
Q |
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| T |
28240753 |
actcataccagtggcagcataatttggcaagtggagagtaaatttggtcaatgagatccacgttactatggtggaatgcactcctataagccctcaacta |
28240852 |
T |
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| Q |
561 |
gaagtccataaggtgaatcaattttttggttgca----ggccctagatggaatgattaaaattaattgtgatgcttttgtgtcttgtaaggagttccggt |
656 |
Q |
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| T |
28240853 |
gcagtccataaggtgaatcaattttttggttgcagaccggccctagatggaatgattaaaattaattgtgatgcttttgtgtcttgtaaggagttccggt |
28240952 |
T |
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| Q |
657 |
agcatgtggaggcattgctagagtctagagatgcaaatggttgtttcctct |
707 |
Q |
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| T |
28240953 |
agcatgtggaggcattgctagagtctagagatgcaaatggttgtttcctct |
28241003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 28240120 - 28240461
Alignment:
| Q |
11 |
acaatattacgaaccttaattaggtgttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggc |
110 |
Q |
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| T |
28240120 |
acaatattacgaaccttaattgggtgttcatgcattgaaatctggcgaggaacaaaaattatacttgatctatgtagcaccgacacttcaagttgaaggc |
28240219 |
T |
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| Q |
111 |
gtgtccaatgcctgacactgacatgtaattacatctaattactgctattttcacaatttataattggtgtttacgtgacagtgtcaatgcttcatagcat |
210 |
Q |
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| T |
28240220 |
gtgtccaatgcctgacactcacaagtaattacatctaattactgctattttcacaatttataattggtgtttacgtgccagtgtcaatgcttcatagcat |
28240319 |
T |
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| Q |
211 |
ttgaccacaaagattacctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgacgcaaacttaatattttcatgcgaaaattcaa |
310 |
Q |
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| T |
28240320 |
ttgaccacaaagattgcctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgaagcaaacttaatattttcatgcaaaaattcag |
28240419 |
T |
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| Q |
311 |
tgttggatagcaaactcacaatcacgggtatgaccttttgtgc |
353 |
Q |
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| T |
28240420 |
tgttggatagcaaactcacaatcac-ggtatgaccttttgtgc |
28240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 21158182 - 21158113
Alignment:
| Q |
40 |
atgcattgaaatctggcgaggaacaaaaatt-acacttgacctatgtagcaccgacacttcaagttgaag |
108 |
Q |
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| T |
21158182 |
atgcattgaaatctggtgaggaacacaaatttacatttgacctatgtaacaccaacacttcaaattgaag |
21158113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 28232548 - 28232602
Alignment:
| Q |
37 |
ttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcacc |
91 |
Q |
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| T |
28232548 |
ttcatgcattaaaatctggcaaggaacaaaaattatatttgacctacgtagcacc |
28232602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 1637954 - 1638033
Alignment:
| Q |
40 |
atgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatg |
120 |
Q |
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| T |
1637954 |
atgcattgaaatctgg-gaggaacacaaattacatttgacctataaaacaccgacactttaaattgaagacgtatccaatg |
1638033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 43163938 - 43163975
Alignment:
| Q |
81 |
tatgtagcaccgacacttcaagttgaaggcgtgtccaa |
118 |
Q |
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| T |
43163938 |
tatgtagcaccgacacttcaagttgaagttgtgtccaa |
43163975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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