View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_30 (Length: 429)
Name: NF1274_low_30
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 45 - 429
Target Start/End: Original strand, 3004936 - 3005320
Alignment:
| Q |
45 |
agtgagatgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgcta |
144 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3004936 |
agtgagacgaaagctttaaggttgtgactggtgcggttttcggacaacagactgatgtggttcaactgtgttggcagtggtgatgtgctgcggtttgcta |
3005035 |
T |
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| Q |
145 |
cctatggttttccttttttagctttgggaggaactgttgcatgggactttggttttgttagggacctgtatggaaatgcacttatgcgtttgttgaaaag |
244 |
Q |
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| T |
3005036 |
cctatggttttccttttttagctttgggagggactgttgcatgggactttggttttgttagggacatgtatggaaatgcacttatgcgtttgttgaaaag |
3005135 |
T |
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| Q |
245 |
ccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggctgtctcgagagactgcaatcaaaattggtgctccagcagtt |
344 |
Q |
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| T |
3005136 |
ccttgaattgcactatgaaattggaggggattggaaacactactgcacacttcgacggctgtctcgagggactgcaatcaaaattggtgctccagtagtt |
3005235 |
T |
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| Q |
345 |
gggagaaattctgttttatttataacattgatagtgcaatgtggtcttttgttatatggagtgtaccaggtcctatgtgtatgtc |
429 |
Q |
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| T |
3005236 |
gggagaaattctgttttatttataacattgatagtgtagtgtggtcttttgttatatggagtgtaccaggtcctatgtgtatgtc |
3005320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 54654935 - 54655176
Alignment:
| Q |
45 |
agtgagatgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgcta |
144 |
Q |
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| T |
54654935 |
agtgagacgaaagctttaaggttgtgactagtgcggttttcagacagcagactgttgtggttcaactgtgttggcagtggtgatgtgctgcggtttgcta |
54655034 |
T |
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| Q |
145 |
cctatggttttccttttttagctttgggaggaactgttgcatgggactttggttttgttagggacctgtatggaaatgcacttatgcgtttgttgaaaag |
244 |
Q |
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| T |
54655035 |
cctatggttttccttttttagctttgggagggactgttgtatgggactttggttttgttagggacctgtatggaaatgcacttatgcgtttgttgaaaag |
54655134 |
T |
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| Q |
245 |
ccttgaattgcactatgaaattggaggggattgaaaacacta |
286 |
Q |
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| T |
54655135 |
ccttgaattgcactatgaaattggaggggattggaaacacta |
54655176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 213 - 429
Target Start/End: Original strand, 7852922 - 7853138
Alignment:
| Q |
213 |
tatggaaatgcacttatgcgtttgttgaaaagccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggctgtctcgag |
312 |
Q |
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|||||||||||||| |||| || ||||||||||| |||||||||||||||||||||| || ||| |||||||| |||| ||||||||||||| |||||| |
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| T |
7852922 |
tatggaaatgcactaatgcattcgttgaaaagccctgaattgcactatgaaattggaaagggttggaaacactactgcaaacttcgacggctgactcgag |
7853021 |
T |
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| Q |
313 |
agactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgcaatgtggtcttttgttatatggagtgtacca |
412 |
Q |
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| T |
7853022 |
ggactgcaatcaaaactggtgctccatcagttggaagaaattttgttttatttataacattgatagtgtagtgtggtcttttgttatatggagtgtagca |
7853121 |
T |
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| Q |
413 |
ggtcctatgtgtatgtc |
429 |
Q |
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| T |
7853122 |
agtcctatgtgtatgtc |
7853138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 213 - 429
Target Start/End: Complemental strand, 5563152 - 5562936
Alignment:
| Q |
213 |
tatggaaatgcacttatgcgtttgttgaaaagccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggctgtctcgag |
312 |
Q |
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|||||||||||||| |||| || ||||||||||| | |||| ||||||||||||||| || ||| |||||||| ||||||||||||||||| ||||||| |
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| T |
5563152 |
tatggaaatgcactaatgcattcgttgaaaagccctaaattacactatgaaattggaaagggttggaaacactactgcacacttcgacggctatctcgag |
5563053 |
T |
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| Q |
313 |
agactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgcaatgtggtcttttgttatatggagtgtacca |
412 |
Q |
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||||||| |||||| | |||||||| |||||| ||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||||| || |
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| T |
5563052 |
ggactgcattcaaaactagtgctccaatagttggaagaaattttgttttatttataacattgatagtgtagtgtggtcttttgtaatatggagtgtagca |
5562953 |
T |
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| Q |
413 |
ggtcctatgtgtatgtc |
429 |
Q |
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| T |
5562952 |
ggtcctatgtgtatgtc |
5562936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 205 - 429
Target Start/End: Complemental strand, 4641809 - 4641584
Alignment:
| Q |
205 |
gggacctgtatggaaatgcacttatgcgtttgttgaaaa-gccttgaattgcactatgaaattggaggggattgaaaacactattgcacacttcgacggc |
303 |
Q |
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||||| |||||||||||||||| |||| || ||||||| ||| | |||| |||| ||||||||||||||||| |||||||| |||| ||||| ||| | |
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| T |
4641809 |
gggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaacgac |
4641710 |
T |
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| Q |
304 |
tgtctcgagagactgcaatcaaaattggtgctccagcagttgggagaaattctgttttatttataacattgatagtgcaatgtggtcttttgttatatgg |
403 |
Q |
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| T |
4641709 |
tgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctggtttatttataacattgatagtgtagtgttgtcttttgttatatag |
4641610 |
T |
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| Q |
404 |
agtgtaccaggtcctatgtgtatgtc |
429 |
Q |
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||||||||| |||||||||||||||| |
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| T |
4641609 |
agtgtaccatgtcctatgtgtatgtc |
4641584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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