View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_low_31 (Length: 425)
Name: NF1274_low_31
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 29 - 412
Target Start/End: Original strand, 4878022 - 4878405
Alignment:
| Q |
29 |
agaaatttgtttaatcaataaaatacttttgaagatggttgttttagcttgaatattgtcgaatactatctactaaatgatagttgagttgtgatgagtt |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878022 |
agaaatttgtttgatcaataaaatacttttgaagatggttgttttagcttgaatattgtcgaatactatctactaaatgatagttgagttgtgatgagtt |
4878121 |
T |
|
| Q |
129 |
aagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaaattggaatgtattatcaccctcatactgtgttaaaacatcaaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4878122 |
aagtttataaatagtttgttgacatttcatagttttacttgatataggctccaaaaattggaatggattatcaccctcatactgtgttaaaacatcaaaa |
4878221 |
T |
|
| Q |
229 |
ttgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagatagtgcagaaatttaattttggtatagagctacttgaaaagaaatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878222 |
ttgacataaaaccaataaaccattagtttaaatggtgaaatctattacaacagatagtgcagaaatttaattttggtatagagctacttgaaaagaaatc |
4878321 |
T |
|
| Q |
329 |
taaacattattctcaaaagccaaaaactgcatatgcacaaatttgcaaaatgctagaatacatttatcatgtaccggtgtattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878322 |
taaacattattctcaaaagccaaaaactgcatatgcacaaatttgcaaaatgctagaatacatttatcatgtaccggtgtattc |
4878405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 277 - 395
Target Start/End: Complemental strand, 12534215 - 12534096
Alignment:
| Q |
277 |
aacagatagtgcagaaatttaattttggtat-agagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcacaaatttgca |
375 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | |||||| |||||| |||||| ||||| | ||| || ||| ||||| |||||||||||||||||||| |
|
|
| T |
12534215 |
aacaaatagtgcagaaatataattttggtatcacagctacatgaaaacaaatctgaacataactcttaacagcaaaaaagtgcatatgcacaaatttgca |
12534116 |
T |
|
| Q |
376 |
aaatgctagaatacatttat |
395 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
12534115 |
aaatggtggaatacatttat |
12534096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University