View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_34 (Length: 419)
Name: NF1274_low_34
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 40242332 - 40242048
Alignment:
| Q |
13 |
aatatcaatcatatttaaggtatatttggaagaaaaagatcaaatatgttgagtttcaaatacacccaaaaattcagnnnnnnnnntgaacatattaaac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
40242332 |
aatatcaatcatatttaaggtatatttggaagaaaaagatcaaatatgttgagtttcaaatacacccaaaaattcagaaaaaaa--ttaacatgttaaac |
40242235 |
T |
|
| Q |
113 |
aaactaaatcttttggaatgcatgaaatatccaaaattgaa-tttgctcatttcctattatgcactcaaggtggtgaaaaataattaggtcatctccttt |
211 |
Q |
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||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||| |||||| |
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| T |
40242234 |
aaactaaattttttggaatggatgaaatatccaaaattgaaatttgctcatttcctat---gcactcaaggtggtgaaaaataatttgctcatatccttt |
40242138 |
T |
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| Q |
212 |
taatattattttttaaaaagaataaattaaacaacccaatatcttgatgatgtacacaatgacataagaatgatgaataatcaaaagtct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40242137 |
taatattattttttaaaaagaataaattaaacaacccaatatcttcatgatgtacacaatgacataagaatgatcaataatcaaaagtct |
40242048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 36085214 - 36085334
Alignment:
| Q |
294 |
aaaagtctatcatagctaaacaaatatttactgcctcctttactcaaaagccaacttaagtatatctggcacctttggaattttaataatttgttgagta |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085214 |
aaaagtctatcatagctaaacaaatatttactgcctcctttactcaaaagccaacttaagtatatctggcacctttggaattttaataatttgttgagta |
36085313 |
T |
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| Q |
394 |
gtcttatacgtagtgagtact |
414 |
Q |
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||||||||||||||||||||| |
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| T |
36085314 |
gtcttatacgtagtgagtact |
36085334 |
T |
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