View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_low_36 (Length: 413)
Name: NF1274_low_36
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 5178512 - 5178140
Alignment:
| Q |
29 |
aagagggccaagctagaaaaggaaagcaaggtaagaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattagct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5178512 |
aagagggccaagctagaaaaggaaagcaaggtaaaaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattacct |
5178413 |
T |
|
| Q |
129 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgnnnnnnnnnnnnnnnnnnnnnctcctcatgcacaatgatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5178412 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgttttttttgtttttgtgttttctcctcatgcacaatgatt |
5178313 |
T |
|
| Q |
229 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaactccaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5178312 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaagtccaa |
5178213 |
T |
|
| Q |
329 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178212 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtat |
5178140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 40190009 - 40190070
Alignment:
| Q |
340 |
taggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtat |
401 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
40190009 |
taggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtat |
40190070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 4846707 - 4846651
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaa |
397 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
4846707 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaa |
4846651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 47753423 - 47753465
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgat |
383 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47753423 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
47753465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University