View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_40 (Length: 391)
Name: NF1274_low_40
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 29 - 384
Target Start/End: Complemental strand, 5178512 - 5178157
Alignment:
| Q |
29 |
aagagggccaagctagaaaaggaaagcaaggtaagaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattagct |
128 |
Q |
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| T |
5178512 |
aagagggccaagctagaaaaggaaagcaaggtaaaaattaaagcaactattatttcctcttttatatgtgtatatttttggtcaaacaatcttattacct |
5178413 |
T |
|
| Q |
129 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgnnnnnnnnnnnnnnnnnnnnnctcctcatgcacaatgatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5178412 |
tgattctattctccttagaaaagttgtgcattttgtagcaatatttgtctctcactcttgttttttttgtttttgtgttttctcctcatgcacaatgatt |
5178313 |
T |
|
| Q |
229 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaactccaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5178312 |
cttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaagtccaa |
5178213 |
T |
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| Q |
329 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcctatgata |
384 |
Q |
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| T |
5178212 |
gaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgata |
5178157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 40190009 - 40190052
Alignment:
| Q |
340 |
taggtggttatgatatagaagaaaaagctgcaagagcctatgat |
383 |
Q |
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| T |
40190009 |
taggtggttatgatatggaagaaaaagctgctagagcttatgat |
40190052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 47753423 - 47753465
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcctatgat |
383 |
Q |
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| T |
47753423 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
47753465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 4846707 - 4846665
Alignment:
| Q |
341 |
aggtggttatgatatagaagaaaaagctgcaagagcctatgat |
383 |
Q |
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| T |
4846707 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
4846665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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