View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_43 (Length: 381)
Name: NF1274_low_43
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 64 - 355
Target Start/End: Complemental strand, 46252888 - 46252611
Alignment:
| Q |
64 |
aacacccctataatcaataataaattaactaactgattgacttcactggttaaatagagattacaatggatagggtttgggtatggtactatagtacatg |
163 |
Q |
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| T |
46252888 |
aacaaccctataatcaataataaattaactaactgattgacttcactggttaaatagagattacaatgaatagggtctgggtatggtactatagtacatg |
46252789 |
T |
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| Q |
164 |
ttccatattagcaatttgaaaataaaaaatacttgtatatgtgcctatacccgcatgagcaacaatatatgcacactccgcccatttccctaatttctac |
263 |
Q |
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| T |
46252788 |
ttccatattagcaatttgaaaataaaaaatacttgtatatgtgccta----------agcaacaatacatgcacactccgcccattaccctaatttctac |
46252699 |
T |
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| Q |
264 |
cctaaaaaattgatcaatcataaaatatcatttcattttaacacaatatattaaaacttggaagatggtttgtccatataggagacaaaagg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||| |
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| T |
46252698 |
tctaaaaaattgatcaatcataaaatatcatttcattttaacaca----attaaaacttggaagatgatctgtccatataggaggcaaaagg |
46252611 |
T |
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