View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_47 (Length: 353)

Name: NF1274_low_47
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_47
NF1274_low_47
[»] chr8 (5 HSPs)
chr8 (1-289)||(43539153-43539441)
chr8 (1-124)||(59600-59723)
chr8 (1-124)||(43539752-43539875)
chr8 (8-122)||(60168-60282)
chr8 (13-124)||(35675674-35675785)
[»] chr4 (6 HSPs)
chr4 (1-289)||(29980029-29980323)
chr4 (22-124)||(29978905-29979007)
chr4 (13-74)||(39267781-39267842)
chr4 (171-243)||(39268231-39268303)
chr4 (14-77)||(39268849-39268912)
chr4 (20-90)||(21623103-21623173)
[»] chr7 (4 HSPs)
chr7 (3-124)||(8484158-8484279)
chr7 (4-124)||(8077545-8077668)
chr7 (4-69)||(8075536-8075601)
chr7 (7-89)||(17200662-17200744)
[»] chr3 (5 HSPs)
chr3 (13-77)||(26652603-26652667)
chr3 (13-124)||(27823789-27823900)
chr3 (6-89)||(40206924-40207008)
chr3 (198-247)||(26652459-26652508)
chr3 (21-90)||(40205950-40206019)
[»] chr1 (1 HSPs)
chr1 (20-89)||(50107190-50107259)
[»] chr5 (2 HSPs)
chr5 (7-86)||(43099258-43099337)
chr5 (9-89)||(43099118-43099198)
[»] chr2 (1 HSPs)
chr2 (9-63)||(8420069-8420123)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 43539153 - 43539441
Alignment:
Q  1 tccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  43539153 tccccgactcaggataaactacaaaatagtccctgaatgtgtatatctgttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtc 43539252  T
Q  101 aattatagggaccaaattgaaagtnnnnnnnntatttcttattcatgatnnnnnnnnnnnnnnnngaatattcatctctatcttcataaagattttattc 200  Q
    ||||||||||||||||||||||||        |||||||||||||||||                |||||||||||||||||||||||||||||||||||    
T  43539253 aattatagggaccaaattgaaagtaaaaaaaatatttcttattcatgataaaaaaccagaaaaaagaatattcatctctatcttcataaagattttattc 43539352  T
Q  201 ttttgggtttaaagatgaaaaactagataagttaatcatcacaaacacaacagaaaaaccactacagagtccaaaagaaaaggcctaac 289  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43539353 ttttgggtttaaagatgaaaaactagataagttaatcatcgcaaacacaacagaaaaaccactacagagtccaaaagaaaaggcctaac 43539441  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 59600 - 59723
Alignment:
Q  1 tccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtc 100  Q
    |||| |||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||  ||||||||||||||||||     |||||||    
T  59600 tccctgactcaggataaactacaaaatagtccctgaatgggtagatctgtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtc 59699  T
Q  101 aattatagggaccaaattgaaagt 124  Q
    ||| ||||||||||||||||||||    
T  59700 aatcatagggaccaaattgaaagt 59723  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 43539875 - 43539752
Alignment:
Q  1 tccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtc 100  Q
    ||||| ||||| |||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||  ||||||||||    |||||||    
T  43539875 tcccctactcaggataaactacaaaatagtccttgaatatgcacatctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtc 43539776  T
Q  101 aattatagggaccaaattgaaagt 124  Q
    ||| ||||||||||||||||||||    
T  43539775 aatcatagggaccaaattgaaagt 43539752  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 60282 - 60168
Alignment:
Q  8 ctcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattata 107  Q
    |||| ||||||||||| ||||||||||||||||||| | ||||||||||| ||||| ||||| ||||||| || |||||||| |  |||||||| | |||    
T  60282 ctcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttacctttaaaaatttctgttaactgctgatgtgtcattcata 60183  T
Q  108 gggaccaaattgaaa 122  Q
    |||||||||||||||    
T  60182 gggaccaaattgaaa 60168  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 35675674 - 35675785
Alignment:
Q  13 gataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattatagggac 112  Q
    |||||||||||||||| ||  ||||| |||| |||||||||||||| | |||||||||||||||| || |||||| |    ||||||||||||||| |||    
T  35675674 gataaactacaaaatattctttgaatatgtacatctgttatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagac 35675773  T
Q  113 caaattgaaagt 124  Q
    |||||| |||||    
T  35675774 caaattaaaagt 35675785  T

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Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 29980323 - 29980029
Alignment:
Q  1 tccccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtc 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||  |||||||    
T  29980323 tccccaactcaagataaactacaaaatagtccctgaatgtgtatatttgttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtc 29980224  T
Q  101 aattatagggaccaaattgaaagtnnnnnnnntatttcttattcatgatnnnnnnnnnnnnnnnn------gaatattcatctctatcttcataaagatt 194  Q
    ||||||||| |||||  |||||||        |||||||||||||||||                      ||||||||||||||||||||||||||||     
T  29980223 aattataggaaccaatctgaaagtaaaaaaaatatttcttattcatgataaaaaaaaaccaaaaaaaaaaagaatattcatctctatcttcataaagatg 29980124  T
Q  195 ttattcttttgggtttaaagatgaaaaactagataagttaatcatcacaaacacaacagaaaaaccactacagagtccaaaagaaaaggcctaac 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||    
T  29980123 ttattcttttgggtttaaagatgaaaaactagataagttaatcatcacaaatacagcagcaaaaccactgcagagtccaaaagaaaaggcctaac 29980029  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 29978905 - 29979007
Alignment:
Q  22 caaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattatagggaccaaattgaa 121  Q
    |||||||||| |||||  | || || ||||||||||||| |||||||||||||||| || ||||||||  | |||||| ||||| |||||||||||||||    
T  29978905 caaaatagtctctgaaaatatacatttgttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaa 29979004  T
Q  122 agt 124  Q
    |||    
T  29979005 agt 29979007  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 39267781 - 39267842
Alignment:
Q  13 gataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaa 74  Q
    |||||| ||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39267781 gataaaatacaataaagtgcctgaatgtgtacatctgttatcagtttagtccttaccgttaa 39267842  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 39268303 - 39268231
Alignment:
Q  171 ttcatctctatcttcataaagattttattcttttgggtttaaagatgaaaaactagataagttaatcatcaca 243  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||||||  |  | ||||||||||||||||    
T  39268303 ttcatctccatcttcatgaagatgttgttcttttgggtttaaagatgaaacgcctgttaagttaatcatcaca 39268231  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 39268912 - 39268849
Alignment:
Q  14 ataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaa 77  Q
    ||||| ||||| | ||| |||||| |||||| |||||||||||||||||  |||||||||||||    
T  39268912 ataaaatacaataaagttcctgaacgtgtatctctgttatcagtttagtttttaccgttaaaaa 39268849  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 21623173 - 21623103
Alignment:
Q  20 tacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 90  Q
    ||||||||||||| |||||||| |  |||||||||| ||||||||    ||||||| ||||||||||||||    
T  21623173 tacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaacta 21623103  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 8484279 - 8484158
Alignment:
Q  3 cccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaa 102  Q
    ||||||| ||||||||||| |||||||||| |||||||||| || ||||||||||||||| |||||||||||||  || |||||||  |  |||||||||    
T  8484279 cccgacttaagataaactataaaatagtccatgaatgtgtaaatttgttatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaa 8484180  T
Q  103 ttatagggaccaaattgaaagt 124  Q
    | |||||||| |||||||||||    
T  8484179 tcatagggactaaattgaaagt 8484158  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 8077668 - 8077545
Alignment:
Q  4 ccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtcctt---accgttaaaaaattatgttaactaccaatgtgtc 100  Q
    |||||||| |||||| || |||||| |  ||||||||||| |||||||||| |||||||||||   |||||| ||||||||||||||| ||  |||||||    
T  8077668 ccgactcaggataaattataaaataatttctgaatgtgtagatctgttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtc 8077569  T
Q  101 aattatagggaccaaattgaaagt 124  Q
    ||| |||| ||||||||| |||||    
T  8077568 aatcatagagaccaaattaaaagt 8077545  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 8075536 - 8075601
Alignment:
Q  4 ccgactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttacc 69  Q
    |||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  8075536 ccgacttatgataaactacaaaataatccttgaatgtgtagatctgttatcagtttagtccttacc 8075601  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 17200744 - 17200662
Alignment:
Q  7 actcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 89  Q
    |||||||||||| |||||||||||| ||| |||||||  ||| |||||| ||||||| ||  ||||||||  || ||||||||    
T  17200744 actcaagataaaatacaaaatagtctctggatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaact 17200662  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 26652667 - 26652603
Alignment:
Q  13 gataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaa 77  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||    
T  26652667 gataaaatacaaaatagtccatgaatgtgtatctctgttatcagtttagtccttactgttaaaaa 26652603  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 27823789 - 27823900
Alignment:
Q  13 gataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaactaccaatgtgtcaattatagggac 112  Q
    |||||| ||||| | ||||  ||||||| ||| ||||||||| ||||||| |||||||||||||| || |||||| |    |||||||||||||| |||     
T  27823789 gataaaatacaataaagtctttgaatgtctatctctgttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggat 27823888  T
Q  113 caaattgaaagt 124  Q
    ||||||||||||    
T  27823889 caaattgaaagt 27823900  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 40207008 - 40206924
Alignment:
Q  6 gactcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtcc-ttaccgttaaaaaattatgttaact 89  Q
    |||||| ||| || || ||| |||||| |||||||| || || |||||||||||||||| ||| |||||||||||||||||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaact 40206924  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 26652508 - 26652459
Alignment:
Q  198 ttcttttgggtttaaagatgaaaaactagataagttaatcatcacaaaca 247  Q
    |||||||||||||||||||||||||| |  |||||||||||||| |||||    
T  26652508 ttcttttgggtttaaagatgaaaaaccatgtaagttaatcatcaaaaaca 26652459  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 40205950 - 40206019
Alignment:
Q  21 acaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaacta 90  Q
    ||||| ||||| ||||||||| |  || ||||||||||||||| ||  ||||||||||||||||||||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaacta 40206019  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 50107259 - 50107190
Alignment:
Q  20 tacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 89  Q
    |||||||||||| ||||||||| |  || ||||||| ||||||||||  ||||||| |||||||||||||    
T  50107259 tacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaact 50107190  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 43099337 - 43099258
Alignment:
Q  7 actcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgtta 86  Q
    ||||||||| || |||| | ||||  |||||||||||  ||||||||||||||||||  || ||||||||| ||||||||    
T  43099337 actcaagattaaatacatagtagtttctgaatgtgtagttctgttatcagtttagtctctaacgttaaaaacttatgtta 43099258  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 43099118 - 43099198
Alignment:
Q  9 tcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtccttaccgttaaaaaattatgttaact 89  Q
    ||||||| || ||||||||||||  || |||||||   | |||||||||||||||| || ||||||||| || ||||||||    
T  43099118 tcaagattaaatacaaaatagtctttgcatgtgtagtaccgttatcagtttagtccctaacgttaaaaacttttgttaact 43099198  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 8420069 - 8420123
Alignment:
Q  9 tcaagataaactacaaaatagtccctgaatgtgtatatctgttatcagtttagtc 63  Q
    ||||||| || |||||| ||||||||||||||| |  ||||||||||||||||||    
T  8420069 tcaagattaaatacaaagtagtccctgaatgtgcacttctgttatcagtttagtc 8420123  T

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