View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_48 (Length: 350)
Name: NF1274_low_48
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 44704177 - 44703896
Alignment:
| Q |
6 |
gatcataatcaacatgttcgtcatctagaacacgaagatgatcataatcaacatgttcgtcatctagaacacgaagatgatcataatcaacatgttcgtc |
105 |
Q |
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| T |
44704177 |
gatcataatcaacatgttggtcatgtagaacgcgaagatgatcataatcaacacgttggtcgtgtagaacacgaagatgatcataatcaacatgttcgtc |
44704078 |
T |
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| Q |
106 |
atctagaacacgaagatgatcataatcaacatgttggtcatgaagaacatgaacataaacaaattgaaaatgcacacatgagggatttttctgaacaagt |
205 |
Q |
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| T |
44704077 |
atgtagaacacgaagatgatcataatcaacatgttggtcatgaagaacatgaacataaacaaattgaaaatgcacacatgagagatttttctgaacaagt |
44703978 |
T |
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| Q |
206 |
aacgaggaagtgggatcaagaaaccatgttaagaagtgcattggatgttctgatgaaaaacaaaggaattgttgcaacagct |
287 |
Q |
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| T |
44703977 |
aatgaggaagtgggatcaagaaaccatgttaagaagtgcattggatgttttgatgaaaaacaaaggaattgttgcaacagct |
44703896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 44704143 - 44704037
Alignment:
| Q |
1 |
aagatgatcataatcaacatgttcgtcatctagaacacgaagatgatcataatcaacatgttcgtcatctagaacacgaagatgatcataatcaacatgt |
100 |
Q |
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||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44704143 |
aagatgatcataatcaacacgttggtcgtgtagaacacgaagatgatcataatcaacatgttcgtcatgtagaacacgaagatgatcataatcaacatgt |
44704044 |
T |
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| Q |
101 |
tcgtcat |
107 |
Q |
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| T |
44704043 |
tggtcat |
44704037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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