View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_50 (Length: 346)
Name: NF1274_low_50
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 83 - 335
Target Start/End: Complemental strand, 40290653 - 40290402
Alignment:
| Q |
83 |
gaagtgattgaatgtgactacatgtgtctgtatgtatcgttgttagtgtctcacatgtctttaatctaaggtgtaggtgtgctacgcaagatgaaagtaa |
182 |
Q |
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| T |
40290653 |
gaagtgattgaatgcgactacatgtgtctgtatgtatcgttgttagtgtctcacatgtctttaatctaaggtgtaggtgtgct-cgtaagatgaaagtaa |
40290555 |
T |
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| Q |
183 |
ttgaagtaggatgatatatcagataagagcagatacttacagccctacaaatactttaaatgaatcatagagaccccactgagcaccagttagtgttcca |
282 |
Q |
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| T |
40290554 |
ttgaagtaggatgatatatcagataagagcagatgcttacagccctacaaatactttaaatgaatcatagagaccccactgagcaccagttagtgttcca |
40290455 |
T |
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| Q |
283 |
atcataactatacgaagaggaaggccacgagtgaaaagaccaactacccctat |
335 |
Q |
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| T |
40290454 |
atcataactatacgaagaggaaggccacgagtgaaaagaccaactacccctat |
40290402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 40290699 - 40290665
Alignment:
| Q |
30 |
gtctctggctgacacacatacactaataataattt |
64 |
Q |
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| T |
40290699 |
gtctctggctgacacacagacactaataataattt |
40290665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 10601644 - 10601559
Alignment:
| Q |
217 |
acttacagccctacaaatactttaaatgaatcatagagaccccactgagcaccagttagtgttccaatcataactatacgaagagg |
302 |
Q |
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| T |
10601644 |
acttacagccccacagaaactttgaatgcatcataaattccccattgagctccagttagagttccaaccataagaatacgaagagg |
10601559 |
T |
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