View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_53 (Length: 331)
Name: NF1274_low_53
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 80 - 318
Target Start/End: Original strand, 40031744 - 40031983
Alignment:
| Q |
80 |
ttcttgctttgtttctagggaagattagcttttatgttagaggttccttttgttgttttgttactggttttatggtttagcttctattaccctgctagtg |
179 |
Q |
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| T |
40031744 |
ttcttgctttgtttctagggaagattagcttttatgttagaggttccttttgttgttttgttactggttttatggtttagcttctattaccctgctagtg |
40031843 |
T |
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| Q |
180 |
caagtgtattagttagccaatcttcggttattcctt-tttctcatgtttattaatgaaatgaaataaccttggctctttgatcacatgcataaaatcttc |
278 |
Q |
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| T |
40031844 |
caagtgtattagttagccaatcttcggttattccttgtttctcatgtttattaatgaaatgaaataaccttggctctttgatcacatgcataaaatcttc |
40031943 |
T |
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| Q |
279 |
cttataaatgaagattaaaatatgagatcattcgcaattc |
318 |
Q |
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| T |
40031944 |
cttataaatgaagattaaaatatgagatcattcgcaattc |
40031983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 5178512 - 5178437
Alignment:
| Q |
6 |
aagagggccaagctagaaaaggaaagcaaggtaagaattaaagcaactattatttcctcttttatatgtgtatatt |
81 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5178512 |
aagagggccaagctagaaaaggaaagcaaggtaaaaattaaagcaactattatttcctcttttatatgtgtatatt |
5178437 |
T |
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