View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_55 (Length: 324)

Name: NF1274_low_55
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_55
NF1274_low_55
[»] chr1 (2 HSPs)
chr1 (63-281)||(40031367-40031585)
chr1 (63-281)||(40036710-40036929)
[»] chr5 (1 HSPs)
chr5 (63-275)||(1346864-1347067)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 63 - 281
Target Start/End: Original strand, 40031367 - 40031585
Alignment:
Q  63 gtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgttattcttcggttaattgaccaatgtatct 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40031367 gtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgttattcttcggtttattgaccaatgtatct 40031466  T
Q  163 atttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgctc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40031467 atttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgctc 40031566  T
Q  263 catgtgttttgagaataat 281  Q
    ||||||||||||| |||||    
T  40031567 catgtgttttgagcataat 40031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 63 - 281
Target Start/End: Original strand, 40036710 - 40036929
Alignment:
Q  63 gtaattgaatcatcttgatagtgtttgcataatcttct-ccatgacttgtttttctgttgtattaccattgttattcttcggttaattgaccaatgtatc 161  Q
    ||||||||| ||||||| ||||||||||||||| || | || |||||||| |||||||| ||||||||||||||||||| | || |||||||||  ||||    
T  40036710 gtaattgaaccatcttgttagtgtttgcataatttttttccttgacttgtatttctgttatattaccattgttattcttggttttattgaccaacatatc 40036809  T
Q  162 tatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgct 261  Q
     ||| ||||||||||| ||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  40036810 cattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgttaaattggatttgct 40036909  T
Q  262 ccatgtgttttgagaataat 281  Q
    |||||||||||||| |||||    
T  40036910 ccatgtgttttgagcataat 40036929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 275
Target Start/End: Complemental strand, 1347067 - 1346864
Alignment:
Q  63 gtaattgaatcatcttgatagtgtttgcataatcttctccatgacttgtttttctgttgtattaccattgttattcttcggttaattgaccaatgtatct 162  Q
    |||||||| |||||| | |||||| | || ||| |||| ||||||||||||||||||| |||||         ||||||| || ||||||||| |||||     
T  1347067 gtaattgattcatctcgttagtgtatacacaattttcttcatgacttgtttttctgttatatta---------ttcttcgcttcattgaccaacgtatcc 1346977  T
Q  163 atttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctttaaactggatttgctc 262  Q
    ||| ||||||||||| ||||| ||| ||||||| |||||||||| |||||||||| |||||||||| |||| |||||||||| ||||| ||||| ||||     
T  1346976 attcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttcgttaaattggatctgctt 1346877  T
Q  263 catgtgttttgag 275  Q
    ||| |||||||||    
T  1346876 catatgttttgag 1346864  T

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