View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_56 (Length: 322)
Name: NF1274_low_56
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 41890030 - 41890295
Alignment:
| Q |
28 |
caagataatcttattaacaactatttattttgatatgaaaactcaagaaaatcaacattcatacatgatttgcagcttctttgaacatatttgatatttg |
127 |
Q |
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| T |
41890030 |
caagataatcttattaacaactagttattttgatatgaaaactcaagaaaaccaacattcatacatgatttgcagcttctttgaacatatttgatatttg |
41890129 |
T |
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| Q |
128 |
taagatattactcctactctatgccttcaacatatgctactttatgtgagctattacttttttgaaattaatcatacaataagtggttaaagtttgggat |
227 |
Q |
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| T |
41890130 |
taagatattactcctactctatgccttcaacatgtgctactttatgtgagctattacttttttgaaattaatcatacaataagtggttaaagtttgggat |
41890229 |
T |
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| Q |
228 |
gattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctca |
293 |
Q |
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| T |
41890230 |
aattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctca |
41890295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 41895772 - 41895852
Alignment:
| Q |
213 |
gttaaagtttgggatgattgcaacatcattcactttaggtatagaaactataagtggatgaatcagcaataatgttcctca |
293 |
Q |
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| T |
41895772 |
gttaaagtttgggataattgtaacatcatgcactttaggtataaaaactataagtggatgaatcaacaataatgttcctca |
41895852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 41881670 - 41881725
Alignment:
| Q |
28 |
caagataatcttattaacaactatttattttgatatgaaaactcaagaaaatcaac |
83 |
Q |
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| T |
41881670 |
caagataatctcattaacaattagttattctgatatgaaaactcaagaaaaccaac |
41881725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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