View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_59 (Length: 309)
Name: NF1274_low_59
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 21289589 - 21289691
Alignment:
| Q |
193 |
taaaataaataataaattcacagatacacaaaacaaactctcacttggttgtttttaatacattcacttcgaagttagtgagtctgacaaccgagcctgt |
292 |
Q |
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| T |
21289589 |
taaaataaataataaattcacagatacacaaaacaaactc--acttggttgttttaaatacattcacttcgaagttagtgagtctgacaaccgagcctgt |
21289686 |
T |
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| Q |
293 |
cttca |
297 |
Q |
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||||| |
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| T |
21289687 |
cttca |
21289691 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 21289208 - 21289302
Alignment:
| Q |
39 |
agtcagaaaaagaattttcgggtagcaggatgggatttccgatcacttcacattggcaaatcacgtcaaggtcatagatcaaaataagcctgttt |
133 |
Q |
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| T |
21289208 |
agtcagaaagagcattttcgggtagcaggatgggatttccgatcacttcacattggcaaatcacgtcaaagtcatagatcaaaataagcctgttt |
21289302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 21288101 - 21288190
Alignment:
| Q |
134 |
catgaatcttaa-catagttgaagagtaataatagtttcatcttttatttcattaactgataaaataaataataaattcacagatacacaaaacaaa |
229 |
Q |
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| T |
21288101 |
catgaatcttaaacatagttgaagactaatgataatttcatcatctatttcattaaccagtaa-------aataaattcacagatacacaaaacaaa |
21288190 |
T |
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