View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_60 (Length: 308)
Name: NF1274_low_60
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 39 - 280
Target Start/End: Original strand, 45901201 - 45901441
Alignment:
| Q |
39 |
tgttttttattttccgttaataaactaactaactagtcaatctatcgtacaaacaaataatagttttattatatttaccagccgaaaggtgaacaccatt |
138 |
Q |
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| T |
45901201 |
tgttttttattttccgttaataaactaactaacta-tcaatctatcgtacaaacaaataatagttttattatatttaccagccgaaagataaacaccatt |
45901299 |
T |
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| Q |
139 |
gcaatttcctaacctaatttagagtaaaatttatttgtttcgtaattcatgcaagcaaatatttatttcgaaatctctgaagtatcacagtgcgtgtttc |
238 |
Q |
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| T |
45901300 |
gcaatttcctaacctaatttagagtaaaagttatttgtttcgtaattcatccaagcaaatatttatttcgtaatctctgaagtatcacagtgtgtggttc |
45901399 |
T |
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| Q |
239 |
aacatccaccatttttacttgaattttttacacgtcatttct |
280 |
Q |
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| T |
45901400 |
aacatccaccatttttacttgaattttttacacgtcatttct |
45901441 |
T |
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