View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_65 (Length: 296)

Name: NF1274_low_65
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_65
NF1274_low_65
[»] chr3 (2 HSPs)
chr3 (59-185)||(25084176-25084302)
chr3 (185-222)||(25084125-25084162)
[»] chr4 (2 HSPs)
chr4 (59-105)||(29576957-29577003)
chr4 (75-108)||(41837560-41837593)
[»] chr2 (1 HSPs)
chr2 (59-120)||(7581930-7581991)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 25084302 - 25084176
Alignment:
Q  59 aatattcatgtcttatgatctacaacgttgacgacgccaatatcattgatctaatttgcactctatcaattttggccacaaaattttggcaggttgtttt 158  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  25084302 aatattcatgtctcatgatctgcaacgttgacgacaccaacatcattgatctaatttgcactctatcaattttggtcacaaaattttggtaggttgtttt 25084203  T
Q  159 gttgatttttattttgagtaaattaca 185  Q
    |||||||||||||||||||||||||||    
T  25084202 gttgatttttattttgagtaaattaca 25084176  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 25084162 - 25084125
Alignment:
Q  185 agagaagtttgaattaaacctcatttccctcttatatc 222  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  25084162 agagaagtttaaattaaaccacatttccctcttatatc 25084125  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 29576957 - 29577003
Alignment:
Q  59 aatattcatgtcttatgatctacaacgttgacgacgccaatatcatt 105  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||    
T  29576957 aatattcatgtcttcggatctgcaacgttgacgacgccaaaatcatt 29577003  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 41837593 - 41837560
Alignment:
Q  75 gatctacaacgttgacgacgccaatatcattgat 108  Q
    |||||||||||||||||||||||| |||||||||    
T  41837593 gatctacaacgttgacgacgccaaaatcattgat 41837560  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 7581930 - 7581991
Alignment:
Q  59 aatattcatgtcttatgatctacaacgttgacgacgccaatatcattgatctaatttgcact 120  Q
    ||||||||||||||  |||||||||||||||||||| |||  || |||||  ||||||||||    
T  7581930 aatattcatgtcttcggatctacaacgttgacgacgtcaaagtcgttgattgaatttgcact 7581991  T

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