View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274_low_73 (Length: 280)
Name: NF1274_low_73
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_73 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 35343384 - 35343194
Alignment:
| Q |
50 |
ttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatggaacgttgaacccgctacaaaacccttgtggacatgatcataaaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
35343384 |
ttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgcgatggaacgttgaccccgctacaaaatccttgtggacttgatcataaaa |
35343285 |
T |
|
| Q |
150 |
aagggcttcttcattggattcacaagcatagtcctacac------atcatagtagtggttttgtggctaaaccaaaatttacatgtatatt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35343284 |
aagggcttcttcattggattcacaagcatagtcctacacatcaacatcatagtagtggttttgtggctaaaccaaaatttacatgtatatt |
35343194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 234
Target Start/End: Original strand, 35362572 - 35362762
Alignment:
| Q |
50 |
ttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatggaacgttgaacccgctacaaaacccttgtggacatgatcataaaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
35362572 |
ttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgcgatggaacgttgaccccgctacaaaatccttgtggacttgatcataaaa |
35362671 |
T |
|
| Q |
150 |
aagggcttcttcattggattcacaagcatagtcctac------acatcatagtagtggttttgtggctaaaccaaaatttacatgtatatt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35362672 |
aagggcttcttcattggattcacaagcatagtcctacacatcaacatcatagtagtggttttgtggctaaaccaaaatttacatgtatatt |
35362762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 35356530 - 35356708
Alignment:
| Q |
50 |
ttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatggaacgttgaacccgctacaaaacccttgtggacatgatcataaaa |
149 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| || |||||||||| |
|
|
| T |
35356530 |
ttctggcaggttgttaaggtgttggagcaatttgaatcttcgcttgctcgtgatggaacattgaccctgctacaaaacccttgtggccaagatcataaaa |
35356629 |
T |
|
| Q |
150 |
aagggcttcttcattggattcacaagcatagtcctacacatcatagtagtggttttgtggctaaaccaaaatttacatg |
228 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
35356630 |
aagggcttcttcattggattcaaaagcttagtcctgcacatcatagtagtggtcccgtgcccaaaccaaaatttacatg |
35356708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University