View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_74 (Length: 280)
Name: NF1274_low_74
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_74 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 91 - 280
Target Start/End: Complemental strand, 50473642 - 50473452
Alignment:
| Q |
91 |
tatagaagtctccgatagactaaaa-ctaacacaacnnnnnnngttgaatatacttagtcttaacttttgttgactcataaactgcaattactcagatat |
189 |
Q |
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| T |
50473642 |
tatagaagtctccgatagactaaaaactaacacaacaaaaaaagttgaatatacttagtcttaacttttgttgactcataaactgcaattactcagatat |
50473543 |
T |
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| Q |
190 |
attataatgatgatgactattttaatatggagagggaacatgtgatattcttagtaatctgactactgtaatgtaactcccaagtagaaat |
280 |
Q |
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| T |
50473542 |
attataatgatgatgactattttaatatggagagggaacatgtgatattcttagtaatctgactactgtaatgtaactcccaagtagaaat |
50473452 |
T |
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