View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274_low_77 (Length: 274)
Name: NF1274_low_77
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274_low_77 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 266
Target Start/End: Complemental strand, 9259953 - 9259712
Alignment:
| Q |
29 |
aattcaaaccataaaattttatatttaaaatagaaacgaataggaaagactttgctacatatannnnnnnnnnnnnnnnnnnnnncataagtaatgtttc |
128 |
Q |
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| T |
9259953 |
aattcaaaccataaaattttatatttaaaatagaaaagaataggaaagactttgctacatatattttttttaaaaaaagaaaaaacataagtaatgtttc |
9259854 |
T |
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| Q |
129 |
gaatttttcgctttttgaattcttggattcttaaaattttaaaatttgaaaaggcnnnnnnngtaatgtgaagccaaagtttaaatt----tatgaggtg |
224 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||| ||| |
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| T |
9259853 |
gaatttttagctttttgaattcttggattcttaaaaatttaaaatttgaaaagggaaaaaaagtaatgtgaagcaaaagtttaaatttatatatgaagtg |
9259754 |
T |
|
| Q |
225 |
tgtatgggggtagggggtgtatggagtgaaactatattcttc |
266 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||| |
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| T |
9259753 |
tgtatgggggtagggggtgtatagagtgaaattatattcttc |
9259712 |
T |
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