View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1274_low_79 (Length: 270)

Name: NF1274_low_79
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1274_low_79
NF1274_low_79
[»] chr6 (64 HSPs)
chr6 (29-232)||(28141094-28141297)
chr6 (97-232)||(29827545-29827680)
chr6 (97-232)||(2186373-2186508)
chr6 (109-233)||(28150730-28150854)
chr6 (109-232)||(28096952-28097075)
chr6 (99-232)||(29469762-29469895)
chr6 (145-229)||(26624821-26624905)
chr6 (145-229)||(26730798-26730882)
chr6 (111-230)||(26863129-26863248)
chr6 (131-229)||(28186962-28187060)
chr6 (110-232)||(28296241-28296363)
chr6 (110-232)||(28515710-28515832)
chr6 (110-232)||(29758956-29759078)
chr6 (146-230)||(27680520-27680604)
chr6 (165-232)||(26850280-26850347)
chr6 (145-232)||(26885638-26885725)
chr6 (153-232)||(26960681-26960760)
chr6 (165-232)||(27697148-27697215)
chr6 (110-232)||(29673519-29673641)
chr6 (168-230)||(31286114-31286176)
chr6 (99-232)||(28902155-28902288)
chr6 (110-230)||(26938581-26938701)
chr6 (144-232)||(27529845-27529933)
chr6 (112-232)||(28327037-28327157)
chr6 (112-232)||(28504673-28504793)
chr6 (97-228)||(26804018-26804149)
chr6 (99-230)||(27216007-27216138)
chr6 (165-232)||(27591574-27591641)
chr6 (165-232)||(27676173-27676240)
chr6 (146-233)||(29694932-29695019)
chr6 (165-228)||(29842548-29842611)
chr6 (178-232)||(26637196-26637250)
chr6 (178-232)||(26743162-26743216)
chr6 (143-221)||(29476608-29476686)
chr6 (180-229)||(25484615-25484664)
chr6 (180-229)||(25581278-25581327)
chr6 (180-229)||(26144424-26144473)
chr6 (165-222)||(27603254-27603311)
chr6 (165-230)||(28787811-28787876)
chr6 (165-230)||(28793932-28793997)
chr6 (119-231)||(26657531-26657643)
chr6 (119-231)||(26763502-26763614)
chr6 (165-229)||(27609679-27609743)
chr6 (165-229)||(27717058-27717122)
chr6 (165-232)||(25075435-25075502)
chr6 (178-233)||(25491879-25491934)
chr6 (177-232)||(26813105-26813160)
chr6 (165-232)||(27663762-27663829)
chr6 (165-232)||(27704822-27704889)
chr6 (144-222)||(29523458-29523536)
chr6 (180-229)||(25512447-25512496)
chr6 (180-229)||(25546539-25546588)
chr6 (180-229)||(26057478-26057527)
chr6 (180-229)||(26077448-26077497)
chr6 (165-230)||(26648028-26648093)
chr6 (165-230)||(26753996-26754061)
chr6 (179-232)||(26951299-26951352)
chr6 (179-232)||(26978936-26978989)
chr6 (153-232)||(28490040-28490119)
chr6 (153-232)||(29802450-29802529)
chr6 (101-231)||(29727451-29727581)
chr6 (168-232)||(26825381-26825445)
chr6 (177-233)||(28478946-28479002)
chr6 (177-233)||(29791401-29791457)
[»] chr1 (4 HSPs)
chr1 (110-231)||(26137439-26137560)
chr1 (110-233)||(5921979-5922102)
chr1 (145-232)||(266888-266975)
chr1 (165-232)||(28126243-28126310)
[»] chr2 (2 HSPs)
chr2 (110-228)||(17991704-17991822)
chr2 (135-226)||(3281218-3281309)
[»] chr5 (1 HSPs)
chr5 (99-232)||(16692417-16692550)
[»] scaffold0019 (1 HSPs)
scaffold0019 (110-229)||(56795-56914)
[»] chr8 (6 HSPs)
chr8 (110-232)||(12590291-12590413)
chr8 (114-228)||(35984859-35984973)
chr8 (99-232)||(16371627-16371760)
chr8 (146-232)||(16441603-16441689)
chr8 (100-228)||(31906614-31906742)
chr8 (110-233)||(16450444-16450567)
[»] scaffold0573 (1 HSPs)
scaffold0573 (99-232)||(7506-7639)
[»] scaffold0277 (2 HSPs)
scaffold0277 (145-228)||(3242-3325)
scaffold0277 (145-228)||(12205-12288)
[»] scaffold0007 (3 HSPs)
scaffold0007 (99-230)||(67865-67996)
scaffold0007 (99-229)||(32519-32649)
scaffold0007 (99-229)||(37268-37398)
[»] chr4 (7 HSPs)
chr4 (166-232)||(18688179-18688245)
chr4 (166-232)||(18678122-18678188)
chr4 (166-232)||(18697965-18698031)
chr4 (166-232)||(18722635-18722701)
chr4 (166-232)||(18730060-18730126)
chr4 (166-232)||(18654042-18654108)
chr4 (180-232)||(5089533-5089585)
[»] chr3 (1 HSPs)
chr3 (110-232)||(615346-615468)
[»] scaffold1870 (1 HSPs)
scaffold1870 (168-232)||(337-401)
[»] scaffold0419 (1 HSPs)
scaffold0419 (168-232)||(9055-9119)
[»] scaffold0349 (1 HSPs)
scaffold0349 (165-229)||(2098-2162)
[»] scaffold0012 (2 HSPs)
scaffold0012 (110-226)||(211631-211747)
scaffold0012 (99-230)||(238363-238495)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 28141297 - 28141094
Alignment:
Q  29 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141297 cataggcattggcagcagatggaacagggacaaaataaaggttaaagactaaaaaacatctataccagtcttactcaccaaattttcttctaaaacttgg 28141198  T
Q  129 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28141197 actatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 28141098  T
Q  229 atgt 232  Q
    ||||    
T  28141097 atgt 28141094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 29827680 - 29827545
Alignment:
Q  97 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 196  Q
    ||||||||||| ||||||||||||| ||||| ||||| |||| || |||||| || ||||| || || ||||||||||| |||||||||||||| |||||    
T  29827680 tcttactcaccgaattttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaat 29827581  T
Q  197 ttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||| || ||||||||||||||||||||    
T  29827580 ttctttacccatgtcttctatcaagtcatgtaatgt 29827545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 2186508 - 2186373
Alignment:
Q  97 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 196  Q
    ||||||||||| ||||| | | ||||||  | ||||| |||| |||| |||| || ||||| ||||| |||||||||||||||||||||||||| || ||    
T  2186508 tcttactcaccgaatttgcatgtaaaacaggaactatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgat 2186409  T
Q  197 ttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||| |||||||||||||||||||||||    
T  2186408 ttctttacccatttcctctatcaagtcatgtaatgt 2186373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 28150854 - 28150730
Alignment:
Q  109 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 208  Q
    ||||| ||||||||||||| | ||| |||| || |||||| || ||  | || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28150854 aatttccttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccat 28150755  T
Q  209 ctcctctatcaagtcatgtaatgtt 233  Q
     || |||||||||||||||||||||    
T  28150754 gtcttctatcaagtcatgtaatgtt 28150730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 232
Target Start/End: Original strand, 28096952 - 28097075
Alignment:
Q  109 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 208  Q
    ||||||||||||||||||| | ||| |||| ||||||| | || || || ||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  28096952 aattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccat 28097051  T
Q  209 ctcctctatcaagtcatgtaatgt 232  Q
     || ||||||||||||||||||||    
T  28097052 gtcttctatcaagtcatgtaatgt 28097075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 29469895 - 29469762
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||||| ||||  ||||||||||||| ||||||||    
T  29469895 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaattt 29469796  T
Q  199 ctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||| ||||| ||||||||||| |||||||||||    
T  29469795 ctttccccatatcctctatcaaatcatgtaatgt 29469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 26624905 - 26624821
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26624905 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaa 26624821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 26730882 - 26730798
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||    
T  26730882 accataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatcaagtcatgtaa 26730798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 26863248 - 26863129
Alignment:
Q  111 ttttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatct 210  Q
    |||||||||||||| |||| ||| || | |||  ||||||| ||||| ||||  || |||||||| || ||||||||||| || |||||||| ||||| |    
T  26863248 ttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttaggagattcttgtcggacgatttctttgcccatgt 26863149  T
Q  211 cctctatcaagtcatgtaat 230  Q
    ||||||||||||||||||||    
T  26863148 cctctatcaagtcatgtaat 26863129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 28187060 - 28186962
Alignment:
Q  131 tatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    |||||||||||||||||| || ||||| ||| | |||||||||||||| || ||||  || ||||||||||||||||| | |||||||||| |||||||    
T  28187060 tatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttacccattttctctatcaaggcatgtaa 28186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 28296241 - 28296363
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28296241 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28296340  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    | |||||||||| ||||||||||    
T  28296341 ttctctatcaaggcatgtaatgt 28296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 28515832 - 28515710
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||| || || | |||||||||||||||||| || ||||| ||| | || ||||||||||| |||| ||   | |||||||||||||||||     
T  28515832 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28515733  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    | |||||||||| ||||||||||    
T  28515732 ttctctatcaaggcatgtaatgt 28515710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 29758956 - 29759078
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||||||||| | ||| || |||   |||||||||||| | ||||| ||||| ||||  || |||||||||| ||||||||||||||||||     
T  29758956 attttcttctaaaacttgcattatatcattagaaaaccataatctagtgcgttttccaggatcttgaggcgattcttgtctaacaatttctttacccata 29759055  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||| ||||| |||||    
T  29759056 tcctctaccaaatcatgcaatgt 29759078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 27680604 - 27680520
Alignment:
Q  146 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    |||||| ||||| ||||  ||||||||||| |||||||||||||| || | |||||||||||| |||| ||||||||||||||||    
T  27680604 ccataacctacttcgttctccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtaat 27680520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 26850347 - 26850280
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||   |||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  26850347 ccaggctctttaattgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgt 26850280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 26885725 - 26885638
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||||| ||||  |||||||||||   ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||    
T  26885725 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctctaccaagtcatgtaatgt 26885638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 26960760 - 26960681
Alignment:
Q  153 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||| ||||| |||||||||||   |||||| ||||||||||||||  ||||||| |||||||||||||||||||||||    
T  26960760 ctactgcgttttccaggctctttaattgattcctgtcgaacaatttccatacccatatcctctatcaagtcatgtaatgt 26960681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27697148 - 27697215
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||||||| | |||||||||||| || | |||||||||||| |||||||||||||||||||||||    
T  27697148 ccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgt 27697215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 29673519 - 29673641
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||||||||| | ||| ||||     |||||||| ||||| ||||| ||||| ||||  |||| |||||||| |||||||||||| |||||     
T  29673519 attttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttcttttcccata 29673618  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||| |||||||||||    
T  29673619 tcctctaccaaatcatgtaatgt 29673641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 31286176 - 31286114
Alignment:
Q  168 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    |||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||    
T  31286176 ggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaat 31286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 28902288 - 28902155
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  28902288 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 28902189  T
Q  199 ctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||| ||||| || |||||||  |||||||||||    
T  28902188 cttttcccatatcttctatcagatcatgtaatgt 28902155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 26938701 - 26938581
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||| ||| || || ||||| ||||| |  ||||| |||||| | ||||  |||| ||||||   ||||||||||| ||||||||||||||||||     
T  26938701 attttcttttaatacatgaactatatctttgtcaaaccacaatctagtgcgttctccagcctctttgactgattcttgtctaacaatttctttacccatg 26938602  T
Q  210 tcctctatcaagtcatgtaat 230  Q
    ||||| |||||||||||||||    
T  26938601 tcctcaatcaagtcatgtaat 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 27529845 - 27529933
Alignment:
Q  144 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||| || ||||| ||||  |||||||| |  |||||||||||||| || | |||||||||||| |||||||||||||||||||||||    
T  27529845 aaccacaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgt 27529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 28327157 - 28327037
Alignment:
Q  112 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 211  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28327157 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28327058  T
Q  212 ctctatcaagtcatgtaatgt 232  Q
    ||| || ||| ||||||||||    
T  28327057 ctccattaaggcatgtaatgt 28327037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 28504793 - 28504673
Alignment:
Q  112 tttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctc 211  Q
    |||||||||| || || | ||| |||||||| ||||| || ||||| | ||| ||||| |||||| | |||||||||||||||||||||||||| || |     
T  28504793 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacctatttg 28504694  T
Q  212 ctctatcaagtcatgtaatgt 232  Q
    ||| || ||| ||||||||||    
T  28504693 ctccattaaggcatgtaatgt 28504673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 228
Target Start/End: Complemental strand, 26804149 - 26804018
Alignment:
Q  97 tcttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaat 196  Q
    |||||||||| |  ||||||| || ||| || ||||| |||| |||   |||||| ||||| |||||  |||| ||||| |||||||||||||| || |     
T  26804149 tcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattcttgtcggacgac 26804050  T
Q  197 ttctttacccatctcctctatcaagtcatgta 228  Q
    |||||||||||| |||| ||||||||||||||    
T  26804049 ttctttacccatgtcctttatcaagtcatgta 26804018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 27216138 - 27216007
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||| | |||||||| || |||||| ||||| || |  || ||||| || ||||| |||| |||||| |  |  |||||||||||||| |||| ||    
T  27216138 ttactcacgatattttcttttagaacttgaactatatcatcgtgaaaccacaacctactgcgttccccaggattgtcgggtgattcttgtcggacaactt 27216039  T
Q  199 ctttacccatctcctctatcaagtcatgtaat 230  Q
    || ||||||| |||||||||||||||||||||    
T  27216038 ctctacccatatcctctatcaagtcatgtaat 27216007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27591574 - 27591641
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| |||||||||||    
T  27591574 ccaggctctttaggtgattcttgtcggacgacttctttacccatgacctctatcaattcatgtaatgt 27591641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27676173 - 27676240
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||||||| |||||||||||||| || | ||||||||||||  |||||||||| |||||||||||    
T  27676173 ccaggctctttaggtgattcttgtcggaccacttctttacccatgacctctatcaattcatgtaatgt 27676240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 29694932 - 29695019
Alignment:
Q  146 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 233  Q
    |||||| ||| | ||||| ||||| ||||  ||||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||||||    
T  29694932 ccataacctagtgcgttttccaggatcttcaggtgattctcgtctaacaatttctttccccatatcctctatcaaatcatgtaatgtt 29695019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 29842548 - 29842611
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 228  Q
    ||||||||||| | ||||||| |||| ||||||||||||||||| || ||||||||||||||||    
T  29842548 ccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgta 29842611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 26637250 - 26637196
Alignment:
Q  178 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  26637250 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgt 26637196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 26743216 - 26743162
Alignment:
Q  178 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  26743216 gtgattcttgtcggacgatttctatacccatatcctctatcaagtcatgtaatgt 26743162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 29476608 - 29476686
Alignment:
Q  143 gaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaag 221  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||| |  ||||||||||||||||||||   ||||||||||    
T  29476608 gaaccataatctactacgtctcccaggatcttctggtgattcctcacgaacaatttctttacccatgctctctatcaag 29476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 25484664 - 25484615
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  25484664 gattcttgtcgaacgacttctttacccatgtcctctatcaagtcatgtaa 25484615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 25581327 - 25581278
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  25581327 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaa 25581278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 26144473 - 26144424
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  26144473 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaa 26144424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 27603254 - 27603311
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagt 222  Q
    ||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||    
T  27603254 ccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagt 27603311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 28787876 - 28787811
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || ||||||||||||||||||    
T  28787876 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaat 28787811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 28793997 - 28793932
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    ||||||||||| || ||||||||||| || | |||||||||||| || ||||||||||||||||||    
T  28793997 ccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaat 28793932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 26657643 - 26657531
Alignment:
Q  119 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 218  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26657643 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26657544  T
Q  219 aagtcatgtaatg 231  Q
    || || |||||||    
T  26657543 aaatcgtgtaatg 26657531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 26763614 - 26763502
Alignment:
Q  119 taaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatc 218  Q
    |||||| || |||||||| || ||  ||||||| ||||| ||||  || ||||||||   |||||||||||| || |||||||||||||| |||||||||    
T  26763614 taaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatc 26763515  T
Q  219 aagtcatgtaatg 231  Q
    || || |||||||    
T  26763514 aaatcgtgtaatg 26763502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27609679 - 27609743
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  27609679 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27609743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 27717058 - 27717122
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  27717058 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 25075502 - 25075435
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||   |||||| ||||| || |||||||||||||| ||||||| |||||||||||||||    
T  25075502 ccaggctctttaattgattcatgtcggacgatttctttacccatgtcctctaacaagtcatgtaatgt 25075435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 25491879 - 25491934
Alignment:
Q  178 gtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 233  Q
    |||||||||||||||| | |||||||||||| | ||||||||||| ||||||||||    
T  25491879 gtgattcttgtcgaacgacttctttacccatgtgctctatcaagttatgtaatgtt 25491934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 26813160 - 26813105
Alignment:
Q  177 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||| | ||||||||||||||| | | |||||||||||||||||||||    
T  26813160 ggtgattcttgttggacaatttctttacccgtgtgctctatcaagtcatgtaatgt 26813105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27663762 - 27663829
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||   |||||||||||| || |||||| ||||||| | |||||||||||||||||||||    
T  27663762 ccaggctctttaattgattcttgtcggactatttctatacccatatactctatcaagtcatgtaatgt 27663829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27704822 - 27704889
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||| |||||||||    
T  27704822 ccaggctctttaattgattcttgtcggacgacttctttacccatatcctctatcaagttatgtaatgt 27704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 29523536 - 29523458
Alignment:
Q  144 aaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagt 222  Q
    ||||||| |||||| | ||||||||||||| ||||||||||| | ||||||| ||||||| |||| | ||| |||||||    
T  29523536 aaccatagtctactacatttcccaggctctgttggtgattctcgacgaacaagttctttagccattttctcgatcaagt 29523458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 25512496 - 25512447
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  25512496 gattcttgtcggacggtttctttacccatgtcctctatcaagtcatgtaa 25512447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 25546588 - 25546539
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  25546588 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 25546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 26057527 - 26057478
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  26057527 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 26057478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 26077497 - 26077448
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  26077497 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 26077448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 26648093 - 26648028
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| ||||||||||||||||    
T  26648093 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaat 26648028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 26754061 - 26753996
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaat 230  Q
    |||||||||||  ||||||||||||| || | ||| |||||||| |||| ||||||||||||||||    
T  26754061 ccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatcaagtcatgtaat 26753996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 26951352 - 26951299
Alignment:
Q  179 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  26951352 tgattcttgtcggatgatttctatacccatatcctctatcaagtcatgtaatgt 26951299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 26978989 - 26978936
Alignment:
Q  179 tgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||| || |||||| ||||||| ||||||||||||| |||||||||    
T  26978989 tgattcttgtcggacgatttctatacccatatcctctatcaagtaatgtaatgt 26978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 28490040 - 28490119
Alignment:
Q  153 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||    
T  28490040 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgt 28490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 29802450 - 29802529
Alignment:
Q  153 ctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||| ||||| ||||| | || |||||| ||||||| |||||||||||| ||||| ||||||| ||| || ||||||||    
T  29802450 ctactgcgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgt 29802529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 29727451 - 29727581
Alignment:
Q  101 actcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttct 200  Q
    |||||||  |||||||||||||||||    ||| |||||| ||  |||||| ||||| ||||  || || |  |||||||| ||||||| ||||||||||    
T  29727451 actcaccttattttcttctaaaactttttgtatatctttagggtcccataacctactgcgttctcccggattatttggtgactcttgtctaacaatttct 29727550  T
Q  201 ttacccatctcctctatcaagtcatgtaatg 231  Q
    || ||||| || |||| ||| ||||||||||    
T  29727551 tttcccatatcttctagcaaatcatgtaatg 29727581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 26825445 - 26825381
Alignment:
Q  168 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||| | ||||| |||||| || | |||||| ||||| |||| ||||||||||||||||||    
T  26825445 ggctctttagatgattgttgtcggactacttctttgcccatgtcctttatcaagtcatgtaatgt 26825381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 28478946 - 28479002
Alignment:
Q  177 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 233  Q
    |||||||||  || |||||||||||| ||||| |||||||| || ||||||||||||    
T  28478946 ggtgattctcttctaacaatttctttccccatatcctctattaaatcatgtaatgtt 28479002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 29791401 - 29791457
Alignment:
Q  177 ggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtt 233  Q
    |||||||||  || |||||||||||| ||||| |||||||| || ||||||||||||    
T  29791401 ggtgattctcttctaacaatttctttccccatatcctctattaaatcatgtaatgtt 29791457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 26137560 - 26137439
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||| |||||| || ||||| |||| ||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||     
T  26137560 attttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccata 26137461  T
Q  210 tcctctatcaagtcatgtaatg 231  Q
    ||||||||||||||||||||||    
T  26137460 tcctctatcaagtcatgtaatg 26137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 5921979 - 5922102
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||||||||| ||||| |||| | || ||||||| ||||| || || ||||||||||| ||||||||||||| |||||||||||| |||||     
T  5921979 attttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatg 5922078  T
Q  210 tcctctatcaagtcatgtaatgtt 233  Q
    ||||||||||  ||||||||||||    
T  5922079 tcctctatcacatcatgtaatgtt 5922102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 266888 - 266975
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||||| ||||  ||||||||||| ||||||||||| || || | |||||||||||| |||||||||| ||||||||||||    
T  266888 accataacctacttcgttctccaggctctttaggtgattcttggcggaccacttctttacccatgtcctctatcatgtcatgtaatgt 266975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 28126243 - 28126310
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||||  |||||||||  || || |||||||||||| | |||||||||||||||||||||||    
T  28126243 ccaggctctttacgtgattctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgt 28126310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 17991704 - 17991822
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||| | |||||| || |||||||| ||||   |||| |||||||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||     
T  17991704 attttcctgtaaaacatgaactatgtcattataacaccacaatctactccgttctccaggctctttaggtgattcttgccgaacgatttctttacccatg 17991803  T
Q  210 tcctctatcaagtcatgta 228  Q
    |||||||||||||||||||    
T  17991804 tcctctatcaagtcatgta 17991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 3281309 - 3281218
Alignment:
Q  135 tctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatg 226  Q
    |||| ||||||||| || || || ||||| ||||||||| ||  |||||| ||||  ||||||||||||||||| || ||||||||||||||    
T  3281309 tcttcatggaaccacaacctgctacgttttccaggctctcttactgattcctgtcttacaatttctttacccatgtcttctatcaagtcatg 3281218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 16692550 - 16692417
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||| |||||||||||||||||| ||||| ||||  || ||||| || ||||| ||||| ||||| | |||||| ||||||| ||| |||||||    
T  16692550 ttactcaccatattttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaattt 16692451  T
Q  199 ctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||| ||||||| ||| |||||    
T  16692450 ctttacccatgtcctcaatcaagtgatgcaatgt 16692417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 56795 - 56914
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||| || |  | ||| ||||||||||||||||| ||||| ||| | |||||||||||||| || ||||  || |||||||||||||||||     
T  56795 attttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttctttacccatt 56894  T
Q  210 tcctctatcaagtcatgtaa 229  Q
    | |||||||||| |||||||    
T  56895 ttctctatcaaggcatgtaa 56914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 12590413 - 12590291
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||||||||||||| | ||  ||||||  | ||||||| ||||| ||||| ||||| | ||  ||||||||||||| ||| |||||||| |||||     
T  12590413 attttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttctttccccata 12590314  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||| |||||||||||    
T  12590313 tcctctaccaaatcatgtaatgt 12590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 35984973 - 35984859
Alignment:
Q  114 tcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcct 213  Q
    |||||||||||||| | ||| |||| |||  ||||||| | ||| || || ||||| |||| |||||||||  ||||||||||||| |||||||| ||||    
T  35984973 tcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaatttccttacccatgtcct 35984874  T
Q  214 ctatcaagtcatgta 228  Q
    |||||||| ||||||    
T  35984873 ctatcaaggcatgta 35984859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 16371627 - 16371760
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    ||||| ||| |||| |||||||||||||| ||||  || ||    |||||||| ||||| ||||  || ||||| ||||||||||||||||| |||||||    
T  16371627 ttacttaccgaattgtcttctaaaacttgaactacatcattgacaaaccataacctactacgttcgcctggctcctttggtgattcttgtcggacaattt 16371726  T
Q  199 ctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| || |||| || || |||||||||    
T  16371727 ctttacccatgtcttctaccaggttatgtaatgt 16371760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 16441689 - 16441603
Alignment:
Q  146 ccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||| | ||||| ||   |||||||| |||||||||    
T  16441689 ccataacctactacgtttgccaggctcatttggtgattcctgtcgaacaatttctctgcccatgtctcgtatcaagttatgtaatgt 16441603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 31906742 - 31906614
Alignment:
Q  100 tactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttc 199  Q
    |||||||  |||| |||||||||||||| | ||| ||||  || |||||||||| ||| ||||| ||||| || | |||||||||   || |||||||||    
T  31906742 tactcactgaattgtcttctaaaacttgaattatatcttcgtgaaaccataatcgactacgttttccaggttcgtctggtgattccaatctaacaatttc 31906643  T
Q  200 tttacccatctcctctatcaagtcatgta 228  Q
    |||| |||| ||| | |||||||||||||    
T  31906642 tttagccatgtccccaatcaagtcatgta 31906614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 16450567 - 16450444
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||| | ||||||||||||||  |||| |   |||||||| ||||| ||||| |||||||| | |||||||||  |||| ||||||||| | |||||     
T  16450567 attttcatttaaaacttggactacatcttcacaaaaccataacctactacgtttgccaggctcatgtggtgattcaagtcggacaatttctctgcccatt 16450468  T
Q  210 tcctctatcaagtcatgtaatgtt 233  Q
    |  | ||||| |||||||||||||    
T  16450467 ttttgtatcaggtcatgtaatgtt 16450444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 7506 - 7639
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||||||||||||||   |||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  7506 ttactcaccgtattttcttctaaaacttcagctatgtctttagcagaccataatctactgcgttctccaggctgatctggtgattctagtctgacaattt 7605  T
Q  199 ctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||| ||||| || |||||||  |||||||||||    
T  7606 cttttcccatatcttctatcagatcatgtaatgt 7639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 3242 - 3325
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 228  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| ||||||||||||||    
T  3242 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgta 3325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 12205 - 12288
Alignment:
Q  145 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgta 228  Q
    ||||||||||||| | ||  ||||||||||| || ||||||||||| || | |||||||||||| |||| ||||||||||||||    
T  12205 accataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgta 12288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 67996 - 67865
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||| ||||||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  67996 ttactcaccgtattttcctctaaaacttcaactatgtctttagatgaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 67897  T
Q  199 ctttacccatctcctctatcaagtcatgtaat 230  Q
    |||| ||||| || |||||||  |||||||||    
T  67896 cttttcccatgtcttctatcagatcatgtaat 67865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 32649 - 32519
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  32649 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 32550  T
Q  199 ctttacccatctcctctatcaagtcatgtaa 229  Q
    |||| ||||| || |||||||  ||||||||    
T  32549 cttttcccatatcttctatcagatcatgtaa 32519  T

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Target: scaffold0007; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 37398 - 37268
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaattt 198  Q
    |||||||||  |||||| || |||||||  ||||||||||||    ||||||||||||| ||||  |||||||  | |||||||||| |||  |||||||    
T  37398 ttactcaccgtattttcctccaaaacttcaactatgtctttaacagaccataatctactgcgttctccaggctgatatggtgattctagtctgacaattt 37299  T
Q  199 ctttacccatctcctctatcaagtcatgtaa 229  Q
    |||| ||||| || |||||||  ||||||||    
T  37298 cttttcccatatcttctatcagatcatgtaa 37268  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18688179 - 18688245
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||||||||  || |||||||||||||||||  |||||| |||||||||||||||    
T  18688179 caggctctttaggtgattctttccggacaatttctttacccatgacctctagcaagtcatgtaatgt 18688245  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18678122 - 18678188
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18678122 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18678188  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18697965 - 18698031
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18697965 caggctctttgggtgattctttccggacgatttctttacccatggcctctagcaagtcatgtaatgt 18698031  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18722635 - 18722701
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||||||||  ||||  ||||||||||||||  |||||| |||||||||||||||    
T  18722635 caggctctttaggtgattctttacgaatgatttctttacccatgacctctagcaagtcatgtaatgt 18722701  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18730060 - 18730126
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18730060 caggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18730126  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18654042 - 18654108
Alignment:
Q  166 caggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||| ||| ||||||||||  || || ||||||||||||||  |||||| |||||||||||||||    
T  18654042 caggctgtttaggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgt 18654108  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 5089533 - 5089585
Alignment:
Q  180 gattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    ||||||| |||||||||||||||||||||    ||||||| ||||||||||||    
T  5089533 gattcttttcgaacaatttctttacccatgatttctatcaggtcatgtaatgt 5089585  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 615468 - 615346
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||||| ||||||||| | ||| ||||||    ||||||| | ||| || ||||| || ||||  ||||||||||||| |||||||||||| |||||     
T  615468 attttcttgtaaaacttgaattatatctttagaagaccataaccgacttcgcttcccgggatcttcgggtgattcttgtctaacaatttctttccccata 615369  T
Q  210 tcctctatcaagtcatgtaatgt 232  Q
    ||||||| ||| |||||||||||    
T  615368 tcctctaccaaatcatgtaatgt 615346  T

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Target: scaffold1870 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 401 - 337
Alignment:
Q  168 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| ||||||||||||||    
T  401 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgt 337  T

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Target: scaffold0419 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 9119 - 9055
Alignment:
Q  168 ggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgt 232  Q
    |||||||| || ||||||||||| || | |||||||||||| |||||||| ||||||||||||||    
T  9119 ggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgt 9055  T

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Target: scaffold0349 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 2098 - 2162
Alignment:
Q  165 ccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaa 229  Q
    |||||||||||   |||||||||||| || | |||||||||||| ||||||||||||||||||||    
T  2098 ccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 211631 - 211747
Alignment:
Q  110 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 209  Q
    |||||| |||||||| || | ||| |||| |  ||||||||||||||| ||||| ||||| | ||  ||||||||||||| |||||||||||| |||||     
T  211631 attttcctctaaaacgtgcattatatcttcagagaaccataatctactgcgttttccaggattttcaggtgattcttgtctaacaatttctttccccata 211730  T
Q  210 tcctctatcaagtcatg 226  Q
    || |||| ||| |||||    
T  211731 tcttctaccaaatcatg 211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 238363 - 238495
Alignment:
Q  99 ttactcaccaaattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatt- 197  Q
    |||||||||  |||||||||||||||||| | ||| ||||||  | ||||||| ||||| ||||| ||| | | ||| ||||| ||| ||| |||||||     
T  238363 ttactcaccgtattttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaagatttttaggtgaatctcgtctaacaattc 238462  T
Q  198 tctttacccatctcctctatcaagtcatgtaat 230  Q
     |||| ||||| ||||||| ||| |||||||||    
T  238463 actttccccatatcctctaccaaatcatgtaat 238495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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