View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275-Insertion-1 (Length: 881)
Name: NF1275-Insertion-1
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 806; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 806; E-Value: 0
Query Start/End: Original strand, 8 - 881
Target Start/End: Original strand, 33387462 - 33388349
Alignment:
| Q |
8 |
gaaacatcaaattccaacccaaaagcaggaaaggtaaggtaaggcttcatttgcgattccgggcttcatccttttccttctctcttttcttgtaaagcct |
107 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387462 |
gaaacatcaaattccaatccaaaagcagaaaaggtaaggtaaggcttcatttgcgattccgggcttcatccttttccttctctcttttcttgtaaagcct |
33387561 |
T |
|
| Q |
108 |
gtcaagaacttgcttcgcttcacaccgtgggaaattagacaaatcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387562 |
gtcaagaacttgcttcgcttcacaccgtgggaaattagacaaatcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagta |
33387661 |
T |
|
| Q |
208 |
cgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatttgatggatgcaattgtaccatctggttat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387662 |
cgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttggggtccaggcaatttgatggatgcaattgtaccatctggttat |
33387761 |
T |
|
| Q |
308 |
ctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387762 |
ctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgact |
33387861 |
T |
|
| Q |
408 |
attgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaaca |
507 |
Q |
| |
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| T |
33387862 |
attgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaaca |
33387961 |
T |
|
| Q |
508 |
aagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387962 |
aagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctag |
33388061 |
T |
|
| Q |
608 |
cttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagtt |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
33388062 |
cttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtaccgctaccatcgcagaaattgaaagaatctcgtttgaacagtt |
33388161 |
T |
|
| Q |
708 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388162 |
gaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaatt |
33388261 |
T |
|
| Q |
808 |
gcacctaagtaattcaacactt-----------attaaggtttca-gagca-gagggtccatgaagtc-aaatgaactaaatcatcta |
881 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
33388262 |
gcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatcta |
33388349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 150 - 829
Target Start/End: Complemental strand, 20817503 - 20816821
Alignment:
| Q |
150 |
atcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagata |
249 |
Q |
| |
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||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
20817503 |
atcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagata |
20817404 |
T |
|
| Q |
250 |
acccactcgggcttgtggtccaggcaatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcctgtccgct---caagatgag |
346 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| | ||| ||| || ||||| |||||||||||| ||||| || ||| ||| ||||| |
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| T |
20817403 |
acccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcctctctgctgatcaaaatgag |
20817304 |
T |
|
| Q |
347 |
ccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtagtcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagc |
446 |
Q |
| |
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||||||||||||| |||||||||||||||| |||| | |||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
20817303 |
ccacctgcatgaaatatcctgctagcattgtctttcttatgttgacgtagtagtggcgactattgaagtcagtgctgcataacttcagattaaaccgagc |
20817204 |
T |
|
| Q |
447 |
catgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgc |
546 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | |||||| ||||||||| |
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|
| T |
20817203 |
catgatacgcactagctgttgtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgc |
20817104 |
T |
|
| Q |
547 |
ttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggcc |
646 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |||||| ||| |||||| |
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| T |
20817103 |
ttgtaggcatgatatacattcaagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggcc |
20817004 |
T |
|
| Q |
647 |
gaataaagcaattgggtaccgataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagg |
746 |
Q |
| |
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| ||||||||||||||||| || | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||| |
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| T |
20817003 |
ggataaagcaattgggtactgacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagg |
20816904 |
T |
|
| Q |
747 |
gtccaatggaaactcactcataatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt |
829 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
20816903 |
gtccaacggaaactcactcataatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaattcaacactt |
20816821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 9e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 300 - 536
Target Start/End: Original strand, 38778277 - 38778513
Alignment:
| Q |
300 |
ctggttatctttcactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaagtatcctgctagcattgcctttttaatgttgacatagtag |
399 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||| |
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| T |
38778277 |
ctggttgtctttaactgtcaagtagtgtcctgtccgctcaagatgagccacctgcatgaaatatcctgctaacattgcctttcttatgttgacgtagtag |
38778376 |
T |
|
| Q |
400 |
tcgcgactattgaagtaagtgctgcataacttcaggttaaaccgagccatgattcgcactagctgttgtcgaacattatcagctgatttcagcgccctgt |
499 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
38778377 |
tcgcgactattgaagtcagtgctgcataacttcaggttaaacctagccatgatacgcactagctgttgtcgaacattatcagctgatttaagcgccctat |
38778476 |
T |
|
| Q |
500 |
gattaacaaagttttcatagcaccaagatggatcctc |
536 |
Q |
| |
|
|||||| ||||| || ||||||||||| | |||||| |
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| T |
38778477 |
tattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 672 - 829
Target Start/End: Original strand, 38779167 - 38779324
Alignment:
| Q |
672 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
771 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
|
| Q |
772 |
tcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt |
829 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||| |
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| T |
38779267 |
tcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacactt |
38779324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 539 - 665
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
539 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
638 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
|
| Q |
639 |
cctaggccgaataaagcaattgggtac |
665 |
Q |
| |
|
||||||||| ||||||||||||||||| |
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| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 38777260 - 38777402
Alignment:
| Q |
44 |
aggtaaggcttcatttgcgattccgggcttcatccttttccttctctcttttcttgtaaagcctgtcaagaacttgcttcgcttcacaccgtgggaaatt |
143 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||| |||||||| |||| ||||| |
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| T |
38777260 |
aggtaaggcttcatttacgattccgggcttcatccttttccttctctcgtttcttgtaaagcttttcaagaacacgctttgcttcacattgtggaaaatt |
38777359 |
T |
|
| Q |
144 |
agacaaatcatagtaatttggtgctatatcaactaaccagtca |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
38777360 |
agacaaatcatagtaatgtggtgctatatcaaccaacctgtca |
38777402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 38778045 - 38778164
Alignment:
| Q |
179 |
accagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagataacccactcgggcttgtggtccaggcaatt |
278 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
|
| Q |
279 |
tgatggatgcaattgtacca |
298 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
38778145 |
tgatggatgcaagtgtacca |
38778164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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