View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275-Insertion-10 (Length: 840)
Name: NF1275-Insertion-10
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-10 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 741; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 7 - 840
Target Start/End: Original strand, 12609445 - 12610280
Alignment:
| Q |
7 |
atatagaacctaatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgtcaacat--gtt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12609445 |
atatagaacctaatttatgtttttaatagtcattcaaactaaattcacaaatgcttcatgcagtttattgaaaactaaatttactttgtcaacatatgtt |
12609544 |
T |
|
| Q |
105 |
ggctcctaatacagttgccaccgataccggacacgttagaatttagaaagcactaagctctacaaaatcagcaaagatgaacaaatctttatttccaaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609545 |
ggctcctaatacagttgccaccgataccggacacattagaatttagaaagcactaagctctacaaaatcagcaaagatgaacaaatctttatttccaaag |
12609644 |
T |
|
| Q |
205 |
taaatatggaacaacaaattcaaggtaatacttatagcctttgcttgtatgtatggttttatcttgccacagaacgaagaggagctctaggtatcaaata |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
12609645 |
taaatatggaacaacaaattcaaggtaatacttatagcctttgcttgtatgtatggttttatcttgccacagaaggaagaggagctgtaggtatcaaata |
12609744 |
T |
|
| Q |
305 |
caagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagtgatacaac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609745 |
caagtcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaac |
12609844 |
T |
|
| Q |
405 |
atcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12609845 |
atcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctt |
12609944 |
T |
|
| Q |
505 |
tgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactaccac |
602 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12609945 |
tgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcac |
12610044 |
T |
|
| Q |
603 |
cttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtct |
702 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12610045 |
cttgcttttgattgg--tatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtct |
12610142 |
T |
|
| Q |
703 |
ctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttctt |
802 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12610143 |
ctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttctt |
12610242 |
T |
|
| Q |
803 |
catcactcttttatcccttaccaactctgacatcgccc |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12610243 |
catcactcttttatcccttaccaactctgacattgccc |
12610280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 280 - 840
Target Start/End: Complemental strand, 15886147 - 15885587
Alignment:
| Q |
280 |
gaagaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattggg |
379 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||| |||||| ||| |
|
|
| T |
15886147 |
gaagaggagcagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcggg |
15886048 |
T |
|
| Q |
380 |
aagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaag |
479 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || || |||||||||||||||| |||||| |
|
|
| T |
15886047 |
aagcctccaatcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaa |
15885948 |
T |
|
| Q |
480 |
ggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttc |
577 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15885947 |
ggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttggatctcttc |
15885848 |
T |
|
| Q |
578 |
caatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagagga |
677 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
15885847 |
caatcgcccatgcattgactatcaccttgcttttggttggtatat--gataaccatcaatctcacatgcttgttcacattctcttggaagtaaaagagga |
15885750 |
T |
|
| Q |
678 |
cctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatattt |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | || || ||||| ||||||| ||||||| |||| |
|
|
| T |
15885749 |
gctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaacattt |
15885650 |
T |
|
| Q |
778 |
ctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgccc |
840 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
15885649 |
ctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgccc |
15885587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 294 - 840
Target Start/End: Original strand, 12636830 - 12637373
Alignment:
| Q |
294 |
ggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaa |
393 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || | || |||||| |||||||||||| || ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
12636830 |
ggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaa |
12636929 |
T |
|
| Q |
394 |
agtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaa |
493 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
12636930 |
agtgatataacaacaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa |
12637029 |
T |
|
| Q |
494 |
attattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgca |
591 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
12637030 |
attatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttggatctctaccaattgtccatgca |
12637129 |
T |
|
| Q |
592 |
ttgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaa |
691 |
Q |
| |
|
|| |||| |||||| |||||| |||||||| |||||| ||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
12637130 |
tttactatcaccttacttttggctggtatat--gatacccttcaatttcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaa |
12637224 |
T |
|
| Q |
692 |
ccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatct |
791 |
Q |
| |
|
||||| ||||||||||| ||| |||| ||||| ||||||||||||| | ||||| ||||| |||||||| |||||||||||| ||| || |||| | |
|
|
| T |
12637225 |
ccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatat |
12637324 |
T |
|
| Q |
792 |
tgtgctttcttcatcactcttttatcccttaccaactctgacatcgccc |
840 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| ||| |||| |
|
|
| T |
12637325 |
tgtgctttcttcatcactcttggatcccttactaactctgccattgccc |
12637373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 283 - 840
Target Start/End: Original strand, 61971 - 62528
Alignment:
| Q |
283 |
gaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaag |
382 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||| ||||| || | |||||||||||||||||| |
|
|
| T |
61971 |
gaggagcaataggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaag |
62070 |
T |
|
| Q |
383 |
cttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaaggga |
482 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||| | | |||||||||||| | || ||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
62071 |
cttccaatcaaagtgatacaacaacattgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaagga |
62170 |
T |
|
| Q |
483 |
atgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaa |
580 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
62171 |
atgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttggatctcttccga |
62270 |
T |
|
| Q |
581 |
tcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacct |
680 |
Q |
| |
|
| ||||||||||| |||| || ||| |||| |||||||||| ||||||||||||| ||| ||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
62271 |
ttgcccatgcattaactatcagctttgttttcattggtatat--gatacccatcaatctcacatgcttctctacattctcttggaagtaaaagagcacct |
62368 |
T |
|
| Q |
681 |
ggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatatttctc |
780 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| |||||| | || ||||||||| |||||| |||| |||| | ||| ||||||||| ||||||||| |
|
|
| T |
62369 |
ggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttcatgttgtatatttctc |
62468 |
T |
|
| Q |
781 |
ttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgccc |
840 |
Q |
| |
|
| || ||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||| |
|
|
| T |
62469 |
tcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgccc |
62528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 3e-81; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 369 - 826
Target Start/End: Original strand, 23145824 - 23146281
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||| | || |||||| ||| ||||| |||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23145824 |
attccactaggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttc |
23145923 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23145924 |
cagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtt |
23146023 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||| |||||| | || || ||||| | ||| |||| || ||| | |||| | ||||||||| || | |
|
|
| T |
23146024 |
tggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgt--gataaccatttatatcacattcttgactacattctctcggta |
23146121 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
23146122 |
acaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcat |
23146221 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaa |
826 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||||| | |||| |||| ||||||| |
|
|
| T |
23146222 |
tttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaa |
23146281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 369 - 822
Target Start/End: Original strand, 23038945 - 23039398
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||||| || |||||| |||| ||||| | || |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23038945 |
attccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttc |
23039044 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| |||||||| |||||||||||| ||||| | ||||| ||| ||| | ||| | | |||||||||||||||||| ||||| || ||||||||||| || |
|
|
| T |
23039045 |
cggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatt |
23039144 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||| |||||| || || || ||||| | ||| |||| ||| ||| || ||| | |||||||||||| | |
|
|
| T |
23039145 |
tggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataa--ccatttatctcacatgtttgacgacattctcttggca |
23039242 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
| |||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||||| |||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
23039243 |
gcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcat |
23039342 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatccctta |
822 |
Q |
| |
|
||||| | ||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
23039343 |
tttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccctta |
23039398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 369 - 805
Target Start/End: Original strand, 23036074 - 23036510
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||| | ||||||||||| ||||| |||||||||| || ||||| |||| |||| |||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23036074 |
attccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttc |
23036173 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| |||||||| |||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
23036174 |
cggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatt |
23036273 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|||||||||| |||| ||||| ||||| | | ||||| || || || ||||| | ||| |||| ||| ||| |||||| |||| |||||||| | |
|
|
| T |
23036274 |
tggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgt--gataaccatttatcacacatgcttgaacacactctcttggta |
23036371 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
| |||||||| ||||||||||||||| | ||| ||||| || ||||| || |||||| ||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
23036372 |
gcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttcat |
23036471 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcat |
805 |
Q |
| |
|
||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
23036472 |
tttgaaaacctctctcacctcagcttgtgctttcttcat |
23036510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 369 - 830
Target Start/End: Original strand, 23148662 - 23149123
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||||| || ||| || |||| ||||| |||| ||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
23148662 |
attccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttc |
23148761 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| |||||||| ||||||||||| || ||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23148762 |
cggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtt |
23148861 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|| ||||||| |||| ||||| ||||||| || ||| || | || || || || | ||| |||| || ||| ||||| | ||||||||| || | |
|
|
| T |
23148862 |
tgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgt--gataaccatttatatcacacgcttgactacattctctcggta |
23148959 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| ||||| |||||| | || |||||| |||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
23148960 |
acaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcat |
23149059 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactct |
830 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||||| | |||| |||| |||||| |||| |
|
|
| T |
23149060 |
tttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctct |
23149123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 369 - 805
Target Start/End: Original strand, 23024176 - 23024612
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||| | |||||| || | ||||||| || |||||||||| |||| |||||||||||||||| || |
|
|
| T |
23024176 |
attccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtc |
23024275 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| |||||||| ||||| |||||||| ||| ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
23024276 |
ccgcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatt |
23024375 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||| |||||| | || |||| || | ||| || || ||| || || ||| |||||||||| || | |
|
|
| T |
23024376 |
tggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgt--cataaccgtctatcttacatgattgagcacattctctcggta |
23024473 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
|||||| || | |||||||||||||| | ||| ||||| |||| ||| || |||||| | |||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
23024474 |
ttaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcat |
23024573 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcat |
805 |
Q |
| |
|
||||| || |||| |||||| |||||||||||||||| |
|
|
| T |
23024574 |
attgaaaatctctcgcacctcagcttgtgctttcttcat |
23024612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 369 - 822
Target Start/End: Original strand, 23139950 - 23140403
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||| | ||||||||||||||||| | | |||||| |||||| | ||||||||||||| ||||||||||| |||| ||||| |||||||||| || |
|
|
| T |
23139950 |
attccactcggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtc |
23140049 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| |||||||| |||||||||||||||| | ||||||| ||| ||||| | | || |||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
23140050 |
ccgcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtt |
23140149 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
||||||||| | || |||||||||||||| |||||||| | || | |||||| | ||| |||| ||| ||| |||||| ||||| |||||||| | |
|
|
| T |
23140150 |
tggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgt--gataaccatgtatctcacatgcttgaccacactctcttggta |
23140247 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
| |||||||| | |||| ||||||||| ||||| ||||| || | ||| || |||||| ||| || || || |||||||| ||||| |||||||||| |
|
|
| T |
23140248 |
gcaaaagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcat |
23140347 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatccctta |
822 |
Q |
| |
|
||||| | ||||| ||||||||||| |||||||||| | |||| |||||||| |
|
|
| T |
23140348 |
tttgaaaacctctctcacctcatcttgcactttcttcattattcttggatccctta |
23140403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 331 - 805
Target Start/End: Original strand, 23016928 - 23017402
Alignment:
| Q |
331 |
ctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt |
430 |
Q |
| |
|
|||||||| |||||||||||| | || || | ||| |||||| |||||||||||| ||||| |||||||||| || ||||| |||||||||||||| |
|
|
| T |
23016928 |
ctccaaattgctcagtcatgtccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatt |
23017027 |
T |
|
| Q |
431 |
tatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaat |
528 |
Q |
| |
|
| ||||||| ||||| || || || ||||||||||||||| ||||||| |||||||| || || ||| ||||||| ||| |||| | | | |||||| |
|
|
| T |
23017028 |
tctcaaaccgaatgtactcccagggcatattcttcttccaccaccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaat |
23017127 |
T |
|
| Q |
529 |
ctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatata |
628 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||| | || ||||| ||||| | || |||||| | || | |||||| | ||| |
|
|
| T |
23017128 |
ctctctggataaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgt--gata |
23017225 |
T |
|
| Q |
629 |
cccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtg |
728 |
Q |
| |
|
|||| ||| ||| ||||| |||||||||||||| || |||||||| ||| ||| ||||| || | ||| ||||| |||||||| || | |||| || |
|
|
| T |
23017226 |
accatgtatctcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactg |
23017325 |
T |
|
| Q |
729 |
agttcatttatacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcat |
805 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||||| || | | || || || |||||||||||||||||||| |
|
|
| T |
23017326 |
agttcatttatgcatttttcatcaacccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcat |
23017402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 369 - 805
Target Start/End: Original strand, 23032618 - 23033039
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
||||||| |||||| |||| ||||| |||||||||| || || || |||| ||||| |||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
23032618 |
attccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttc |
23032717 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactt |
566 |
Q |
| |
|
| ||||||||||||||||||||||||||| | ||||| ||| ||||| ||| |||||||| |||||||||||||||||||| || |
|
|
| T |
23032718 |
cggcaccaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaat---------------ctctctggttcagtccagtagtt |
23032802 |
T |
|
| Q |
567 |
tggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaa |
666 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||| |||||| ||||| |||||||| | ||| |||| ||| ||| |||||| || ||||||||||| | |
|
|
| T |
23032803 |
tggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgt--gataaccatttatctcacatgcttgaccgcattctcttggta |
23032900 |
T |
|
| Q |
667 |
gtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcat |
766 |
Q |
| |
|
| |||||||| ||| |||||| ||||| | ||| ||||| || ||||| || |||||| |||| || || ||||||| ||||| ||||||||||| |
|
|
| T |
23032901 |
gcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctttcat |
23033000 |
T |
|
| Q |
767 |
gttgaatatttctcttacctcatcttgtgctttcttcat |
805 |
Q |
| |
|
||||| | ||||| |||||| |||||||||||||||| |
|
|
| T |
23033001 |
tttgaaaacctctctcacctcagcttgtgctttcttcat |
23033039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 297 - 688
Target Start/End: Original strand, 22971783 - 22972174
Alignment:
| Q |
297 |
atcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagt |
396 |
Q |
| |
|
|||||||||| ||||||||||||| | || | ||||||||| |||||||||| | || ||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
22971783 |
atcaaatacatgtcatcttttcttataacagaagctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagt |
22971882 |
T |
|
| Q |
397 |
gatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaatt |
496 |
Q |
| |
|
|| |||| | || ||||||| || ||||||||| || |||| | | | |||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22971883 |
gagacaataagaaagcaagtgtcagttcaacatttgccataccatagttaatgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatt |
22971982 |
T |
|
| Q |
497 |
attccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattg |
594 |
Q |
| |
|
| |||||| | || ||| ||| | || ||||| || ||||||||| | ||||| |||||||| || |||||||| |||||||| ||||| |||||| |
|
|
| T |
22971983 |
tgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattg |
22972082 |
T |
|
| Q |
595 |
actaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacctggagggtg |
688 |
Q |
| |
|
| || |||| | |||||||||||||| | ||| ||||||||| ||| ||||||||||| | ||||| | |||||||||||| |||||||| |
|
|
| T |
22972083 |
attatcaccctacttttgattggtatgt--gataaccatcaatctcacaagcttgtccacacacccttggtactaaaagaggaccaggagggtg |
22972174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 373 - 712
Target Start/End: Complemental strand, 22941666 - 22941327
Alignment:
| Q |
373 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagc |
472 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| | |||||||||||| || ||||| |||||||||||||| |
|
|
| T |
22941666 |
cattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgttactcccggacacattcttcttccagc |
22941567 |
T |
|
| Q |
473 |
accaaagggaatgtactcaaaattattccctttgta--gaatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgga |
570 |
Q |
| |
|
|||||| |||||| ||||||||||||| || || || | | | || | || || || || |||||||| |||||||| ||| ||| | |||||| |
|
|
| T |
22941566 |
accaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatcccaatgatttgga |
22941467 |
T |
|
| Q |
571 |
tctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaa |
670 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||| |||||||| | ||||||| |||||||| || ||| |||||||||||||||||||||||| || |
|
|
| T |
22941466 |
tctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatttcacatgcttgtccacattctcttggaagcaa |
22941369 |
T |
|
| Q |
671 |
aagaggacctggagggtgtaaccttaaggtctctttcacaac |
712 |
Q |
| |
|
|| | | | |||||||| || || || |||||||||||||| |
|
|
| T |
22941368 |
aaatgcagcaggagggtgcaatctcaatgtctctttcacaac |
22941327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 373 - 672
Target Start/End: Original strand, 22831743 - 22832042
Alignment:
| Q |
373 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattcttcttccag |
471 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || ||||||||||| |||||||||| | ||||||||||||| || || ||| | |||||||| |||| |
|
|
| T |
22831743 |
cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag |
22831841 |
T |
|
| Q |
472 |
caccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgg |
569 |
Q |
| |
|
||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || ||| | ||||| |
|
|
| T |
22831842 |
caccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgg |
22831941 |
T |
|
| Q |
570 |
atctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagta |
669 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||| |||||||| | ||||||| |||||||| ||| ||| ||||| |||||||||||||||||| | |
|
|
| T |
22831942 |
atctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttggaagca |
22832039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 365 - 724
Target Start/End: Complemental strand, 22916974 - 22916612
Alignment:
| Q |
365 |
tttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctt |
464 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||| ||| | ||| ||||||||| |||||||| |||||| |
|
|
| T |
22916974 |
tttcattgcattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattctt |
22916875 |
T |
|
| Q |
465 |
cttccagcaccaaagggaatgtactcaaaattattccctttgt-agaat----agagctaccgatgaatctctctggataaaacctctctggttcagtcc |
559 |
Q |
| |
|
|| ||| ||||| |||||| ||||||||||||| ||||||| | ||| | | | ||||||| || || |||||||| || ||||| ||| || |
|
|
| T |
22916874 |
ctgccactgccaaacggaatgaactcaaaattattacctttgtaataatctacacaattgtcgatgaacctttcaggataaaatctttctggatcatccc |
22916775 |
T |
|
| Q |
560 |
agtactttggatctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattct |
659 |
Q |
| |
|
| | ||||||||||||||||| ||||| ||||| |||| ||| |||||||| | ||| |||| |||||||| || ||| |||||||||||| || |
|
|
| T |
22916774 |
aattatttggatctcttccaatggcccaagcattcactatcactttgcttttaaatgg--tataccatacccatttatttcacatgcttgtccacactcc |
22916677 |
T |
|
| Q |
660 |
cttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgactttaaata |
724 |
Q |
| |
|
||||| | ||||| | || ||||| ||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22916676 |
cttggcaataaaaatgctccaggaggatgtaatctcaatgtctctttcacaacacactttaaata |
22916612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 297 - 679
Target Start/End: Original strand, 22946236 - 22946618
Alignment:
| Q |
297 |
atcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcattccattgggaagcttccaatcaaagt |
396 |
Q |
| |
|
|||||||| | ||||||||| ||| | || | ||||||||| |||||||||||| || ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
22946236 |
atcaaatataggtcatctttccttataacagaagctccaaatagctcagtcatgtccaaatcctcatttttcattccaccaggaagtttccaatcaaagt |
22946335 |
T |
|
| Q |
397 |
gatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaatt |
496 |
Q |
| |
|
| |||| | ||| ||||||| || |||||||||| || ||| | || | || ||||| ||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
22946336 |
ggcacaataacaaagcaagtgtcagctcaacatttgccataccgtagttgatgcccggacaaattctccttccggcaccaaatggaatgtactcaaaatt |
22946435 |
T |
|
| Q |
497 |
attccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattg |
594 |
Q |
| |
|
| |||||| | || ||| ||| | || ||||| || ||||||||| | ||||| |||||||| || |||||||| |||||||| ||||| |||||| |
|
|
| T |
22946436 |
tgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttggatcccttccaattgcccaagcattg |
22946535 |
T |
|
| Q |
595 |
actaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagaggacc |
679 |
Q |
| |
|
| || |||| | || ||||||||||| | ||| ||||||||| ||| ||||||| |||| | || |||| |||||||||||| |
|
|
| T |
22946536 |
attatcaccctactattgattggtatgt--gataaccatcaatctcacatgcttgtgcacacaccctaggaattaaaagaggacc |
22946618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 22932125 - 22932256
Alignment:
| Q |
377 |
gggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcacca |
476 |
Q |
| |
|
|||||| |||||||||||||| |||| || ||||||||||| ||||||||| | | ||| |||||||| |||||||| |||||||| ||| ||| |
|
|
| T |
22932125 |
gggaagtttccaatcaaagtggtacatcaacaatgcaagtgaaaactcaacactgaccaatccaaatgtaacccctggacacattcttctgccactgcca |
22932224 |
T |
|
| Q |
477 |
aagggaatgtactcaaaattattccctttgta |
508 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||| |
|
|
| T |
22932225 |
aacggaatgaactcaaaattattacctttgta |
22932256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 369 - 506
Target Start/End: Original strand, 22986181 - 22986318
Alignment:
| Q |
369 |
attccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttc |
468 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| || | |||||| | |||||||||| || |||| | | | || ||||| ||||| |||| |
|
|
| T |
22986181 |
attccattgggaagtttccaatcaaaatgatacaatatgagtgcaaggacttgctcaacatttgccataccataattcatgccaggacaaattctccttc |
22986280 |
T |
|
| Q |
469 |
cagcaccaaagggaatgtactcaaaattattccctttg |
506 |
Q |
| |
|
|||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
22986281 |
cagcaccaaatggaatgtactcaaaattagttcctttg |
22986318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 378 - 825
Target Start/End: Original strand, 21779726 - 21780173
Alignment:
| Q |
378 |
ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaa |
477 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||| | | ||||| |||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
21779726 |
ggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa |
21779825 |
T |
|
| Q |
478 |
agggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctct |
575 |
Q |
| |
|
| |||||||||||||||||| ||||||| || |||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
21779826 |
atggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttggatctct |
21779925 |
T |
|
| Q |
576 |
tccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagag |
675 |
Q |
| |
|
| |||| ||||| ||||||| || |||||| | || || || || | || |||| || ||| |||||| | ||||||||| || | ||||||| |
|
|
| T |
21779926 |
tgcaattgcccaagcattgattatcaccttagtcttaatcggaatgt--ggtaaccatttatatcacatgcttgactacattctctcggtaacaaaagag |
21780023 |
T |
|
| Q |
676 |
gacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaatat |
775 |
Q |
| |
|
| |||||||||||| ||||||||| ||||| |||||||| || |||||| |||||||||| || |||||||| ||||| |||||||||| ||||| | |
|
|
| T |
21780024 |
gtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaac |
21780123 |
T |
|
| Q |
776 |
ttctcttacctcatcttgtgctttcttcatcactcttttatcccttacca |
825 |
Q |
| |
|
|||||| || |||||||||||||||||||| | |||| ||||||||||| |
|
|
| T |
21780124 |
ttctctcacttcatcttgtgctttcttcattattcttggatcccttacca |
21780173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 115; Significance: 6e-58; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 378 - 732
Target Start/End: Complemental strand, 6841 - 6487
Alignment:
| Q |
378 |
ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaa |
477 |
Q |
| |
|
||||||||||| ||||| |||||||||| || ||||| |||| |||||||||| ||||||||||| | || ||||| || ||||||||||||||||||| |
|
|
| T |
6841 |
ggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaa |
6742 |
T |
|
| Q |
478 |
agggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttggatctct |
575 |
Q |
| |
|
| |||||||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
6741 |
aaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttggatctct |
6642 |
T |
|
| Q |
576 |
tccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagtaaaagag |
675 |
Q |
| |
|
| |||| ||||| ||||||| || |||||| || | | ||||| | |||| |||| ||| ||| ||||| |||||||||||||| || ||||||| |
|
|
| T |
6641 |
tgcaattgcccaagcattgattatcaccttactcctaaacggtatgt--tataaccatttatctcacatgctttaccacattctcttggtagcaaaagag |
6544 |
T |
|
| Q |
676 |
gacctggagggtgtaaccttaaggtctctttcacaactgactttaaataagtgagtt |
732 |
Q |
| |
|
| |||||||||||||||| | ||| ||||| || ||||| || |||||| |||||| |
|
|
| T |
6543 |
gtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtt |
6487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 373 - 672
Target Start/End: Complemental strand, 5594322 - 5594023
Alignment:
| Q |
373 |
cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattcttcttccag |
471 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || ||||||||||| |||||||||| | ||||||||||||| || || ||| | |||||||| |||| |
|
|
| T |
5594322 |
cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag |
5594224 |
T |
|
| Q |
472 |
caccaaagggaatgtactcaaaattattccctttgtag--aatagagctaccgatgaatctctctggataaaacctctctggttcagtccagtactttgg |
569 |
Q |
| |
|
||||||| |||||| ||||||||||||| || || ||| | | | ||| | |||||||| || |||||||| || ||||| || ||| | ||||| |
|
|
| T |
5594223 |
caccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgg |
5594124 |
T |
|
| Q |
570 |
atctcttccaatcgcccatgcattgactaccaccttgcttttgattggtatataatatacccatcaatcccacctgcttgtccacattctcttggaagta |
669 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||| |||||||| | ||||||| |||||||| ||| ||| ||||| |||||||||||||||||| | |
|
|
| T |
5594123 |
atctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttggaagca |
5594026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 23610117 - 23610155
Alignment:
| Q |
365 |
tttcattccattgggaagcttccaatcaaagtgatacaa |
403 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
23610117 |
tttcattccattgggaagtttccaatcaaaatgatacaa |
23610155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 7154548 - 7154492
Alignment:
| Q |
450 |
cctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttg |
506 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
7154548 |
cctggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttg |
7154492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 598
Target Start/End: Complemental strand, 41465854 - 41465806
Alignment:
| Q |
550 |
ggttcagtccagtactttggatctcttccaatcgcccatgcattgacta |
598 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41465854 |
ggttcactccaatactttggatctcttccaatcgcccatgcatttacta |
41465806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 400
Target Start/End: Complemental strand, 41317229 - 41317195
Alignment:
| Q |
366 |
ttcattccattgggaagcttccaatcaaagtgata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317229 |
ttcattccattgggaagcttccaatcaaagtgata |
41317195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 400
Target Start/End: Complemental strand, 41329269 - 41329236
Alignment:
| Q |
367 |
tcattccattgggaagcttccaatcaaagtgata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41329269 |
tcattccattgggaagcttccaatcaaagtgata |
41329236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 366 - 400
Target Start/End: Complemental strand, 41287395 - 41287361
Alignment:
| Q |
366 |
ttcattccattgggaagcttccaatcaaagtgata |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
41287395 |
ttcattccattgagaagcttccaatcaaagtgata |
41287361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 562 - 596
Target Start/End: Complemental strand, 41305343 - 41305309
Alignment:
| Q |
562 |
tactttggatctcttccaatcgcccatgcattgac |
596 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41305343 |
tactttggatctcttccaatcgcccaagcattgac |
41305309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 439 - 508
Target Start/End: Complemental strand, 2433708 - 2433639
Alignment:
| Q |
439 |
caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgta |
508 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
2433708 |
caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgta |
2433639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University