View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275-Insertion-12 (Length: 489)
Name: NF1275-Insertion-12
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 207 - 458
Target Start/End: Complemental strand, 14772263 - 14772019
Alignment:
| Q |
207 |
acccacattttattgatgaataaataagaatctgtcattcttatatctcattcnnnnnnnaaaacaccaatagtggcgctaccaatagcaaactcaaatc |
306 |
Q |
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| T |
14772263 |
acccacattttattgatgaataaataagaatctgtcattcatatatctcattctttttttaaaacaccaatagtggcgctaccaatagcaaactcaaatc |
14772164 |
T |
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| Q |
307 |
aattttttggaataggttatcttagttggtggttttgcttgccctattactacttgtttgggtatttgttaatctttgtttattgttggtttatcatatc |
406 |
Q |
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| T |
14772163 |
aattttttggaataggttatcttagttggtggtt----ttgccctat---tacttgtttgggta-ttgttaatctttgtttactgttggtttatcagatc |
14772072 |
T |
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| Q |
407 |
atcttgttttaaacttttggcgttctcttcgataaatctt-cactaggaaaaa |
458 |
Q |
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| T |
14772071 |
atcttgttttaaacttttgtcgttctcttcgatacatcttgcactaggaaaaa |
14772019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 14772556 - 14772356
Alignment:
| Q |
8 |
cctacttcccccaaacatcgaagaccaaatgcattaacatggtcttgtactattgtnnnnnnngttggtcttgttgatacaataacttggtaaaataata |
107 |
Q |
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| T |
14772556 |
cctacttcccccaaacatcgaagaccaaatgcattaacatggtcttgtactattgtaaaaaaatttggtcgtgttgatgcaataacttggtaaaataata |
14772457 |
T |
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| Q |
108 |
gcagtttttactttttagtcaaacttgttaaggagaaacaatgcataaaacacagaat--tatcattatcctaatttggaacaatattttcctattcctt |
205 |
Q |
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| T |
14772456 |
gcagtttttactttttagtcaaacttgttaaggagaaacaatgcataaaacacagaattatatcattatcctaatttggaacaatattttcctattcctt |
14772357 |
T |
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| Q |
206 |
a |
206 |
Q |
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| T |
14772356 |
a |
14772356 |
T |
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