View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1275-Insertion-13 (Length: 196)
Name: NF1275-Insertion-13
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-13 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 5920085 - 5919897
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5920085 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctatttcaacttcatatgtccatggccatagatattttctcactatacttgat |
5919986 |
T |
|
| Q |
108 |
gaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctcatgatcagaac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5919985 |
gaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttccgttcatgtgaaaaatttcattctcatgatcagaac |
5919897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 14613262 - 14613408
Alignment:
| Q |
36 |
cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattc |
135 |
Q |
| |
|
|||||||| || ||||||||||| || | | | ||||| ||| ||||||||||||||||| || |||||||| | || |||||| | |||||| ||| |
|
|
| T |
14613262 |
cattttgatatttggggtcctctatccactgcttatgtacataatcatagatattttctcaccattcttgatgattacagtagatttgtttggattgttc |
14613361 |
T |
|
| Q |
136 |
ttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcatt |
182 |
Q |
| |
|
|| |||| || ||||| |||||||| | ||||| ||||| |||||| |
|
|
| T |
14613362 |
ttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttcatt |
14613408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 20324397 - 20324209
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20324397 |
tcatgcttctactaattttgaattacttcattttgacatatggggtcctatttccatttcatctgtccatggtcatagatattttctcactatacttgat |
20324298 |
T |
|
| Q |
108 |
gaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctcatgatcagaac |
196 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
20324297 |
gatcatagcagatttttatggattattcttctaaaatctaaatcagaagtttctcttcatgtgaaaaacttcattctcatgatcagaac |
20324209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 32612731 - 32612625
Alignment:
| Q |
86 |
atattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctc |
185 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||||||||| ||||| | |||||| |||| || || ||||||||||| |||||||||||| ||| || ||| |
|
|
| T |
32612731 |
atattttctcaccatattggatgatcatagcagatttctatgggtcattcttttaaaatcaaagtcagaagtttctattcatgtgaaaatttttatcctc |
32612632 |
T |
|
| Q |
186 |
atgatca |
192 |
Q |
| |
|
||||||| |
|
|
| T |
32612631 |
atgatca |
32612625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 52777617 - 52777731
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| || |||||||| | || ||| ||| ||| ||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
52777617 |
tcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagat |
52777716 |
T |
|
| Q |
108 |
gaccatagcagattt |
122 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
52777717 |
gatcatagcagattt |
52777731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 18834281 - 18834149
Alignment:
| Q |
28 |
aattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatg |
127 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| | ||| | || ||| | |||| ||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
18834281 |
aattgcttcattttgacatacggggaccccttgccattaattcagtacatagacataaatattttcttactattgttgatgaccataccagatttttatg |
18834182 |
T |
|
| Q |
128 |
gattattcttctaaagtctaaatcagaagtttc |
160 |
Q |
| |
|
||| |||||| | || ||||| || |||||||| |
|
|
| T |
18834181 |
gatcattcttttgaaatctaagtctgaagtttc |
18834149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 35087208 - 35087315
Alignment:
| Q |
75 |
catggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaa |
174 |
Q |
| |
|
||||| ||||| |||||| | |||||||||||||||||||||||||| | ||||||||| | || ||| | ||| | ||||| || || ||||| |||| |
|
|
| T |
35087208 |
catggtcataggtattttttgactatacttgatgaccatagcagattcctttggattattttacttaagaccaaagctgaagtctctctccatgtcaaaa |
35087307 |
T |
|
| Q |
175 |
atttcatt |
182 |
Q |
| |
|
|||||||| |
|
|
| T |
35087308 |
atttcatt |
35087315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 22177285 - 22177171
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| || |||||||| | || ||| ||| ||| ||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
22177285 |
tcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagat |
22177186 |
T |
|
| Q |
108 |
gaccatagcagattt |
122 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
22177185 |
gatcatagcagattt |
22177171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 10946 - 11060
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| || |||||||| | || ||| ||| ||| ||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
10946 |
tcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagat |
11045 |
T |
|
| Q |
108 |
gaccatagcagattt |
122 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
11046 |
gatcatagcagattt |
11060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 19587054 - 19586940
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| || |||||||| | || ||| ||| ||| ||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
19587054 |
tcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagat |
19586955 |
T |
|
| Q |
108 |
gaccatagcagattt |
122 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
19586954 |
gatcatagcagattt |
19586940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 12285237 - 12285351
Alignment:
| Q |
8 |
tcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgat |
107 |
Q |
| |
|
|||||| |||||||||| |||||| |||||| |||| || |||||||| | || ||| ||| ||| ||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
12285237 |
tcatgcttctaccaattatgaattacttcatcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagat |
12285336 |
T |
|
| Q |
108 |
gaccatagcagattt |
122 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
12285337 |
gatcatagcagattt |
12285351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 4646323 - 4646295
Alignment:
| Q |
81 |
catagatattttctcactatacttgatga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4646323 |
catagatattttctcactatacttgatga |
4646295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 13751 - 13853
Alignment:
| Q |
80 |
ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc |
179 |
Q |
| |
|
|||||||||||||||||| || |||||||| | || |||||| | |||||| ||||| |||| || ||||| |||||||| | ||||| ||||| ||| |
|
|
| T |
13751 |
ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc |
13850 |
T |
|
| Q |
180 |
att |
182 |
Q |
| |
|
||| |
|
|
| T |
13851 |
att |
13853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 19653410 - 19653512
Alignment:
| Q |
80 |
ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc |
179 |
Q |
| |
|
|||||||||||||||||| || |||||||| | || |||||| | |||||| ||||| |||| || ||||| |||||||| | ||||| ||||| ||| |
|
|
| T |
19653410 |
ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc |
19653509 |
T |
|
| Q |
180 |
att |
182 |
Q |
| |
|
||| |
|
|
| T |
19653510 |
att |
19653512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 3820209 - 3820156
Alignment:
| Q |
86 |
atattttctcactatacttgatgaccatagcagatttttatggattattcttct |
139 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||| | | |||||||||||||| |
|
|
| T |
3820209 |
atattttctcactattcttgatgatcatagtagatatgtttggattattcttct |
3820156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University