View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275-Insertion-15 (Length: 87)

Name: NF1275-Insertion-15
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275-Insertion-15
NF1275-Insertion-15
[»] chr3 (1 HSPs)
chr3 (7-87)||(30261373-30261453)
[»] chr5 (2 HSPs)
chr5 (54-85)||(5147413-5147444)
chr5 (54-85)||(15898637-15898668)
[»] chr1 (1 HSPs)
chr1 (54-87)||(24131318-24131351)
[»] chr2 (3 HSPs)
chr2 (50-82)||(36748310-36748342)
chr2 (53-80)||(314592-314619)
chr2 (58-85)||(6972461-6972488)
[»] chr7 (1 HSPs)
chr7 (48-87)||(37264469-37264508)
[»] chr6 (2 HSPs)
chr6 (53-80)||(15325311-15325338)
chr6 (53-80)||(33921385-33921412)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 30261373 - 30261453
Alignment:
Q  7 acaaccgacaatgaccaatgttatcaaacagttgtactcttgttaactactccctccgtcccattttaactgagtcttttg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30261373 acaaccgacaatgaccaatgttatcaaacagttgtactcttgttaactactccctccgtcccattttaactgagccttttg 30261453  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 5147413 - 5147444
Alignment:
Q  54 tactccctccgtcccattttaactgagtcttt 85  Q
    ||||||||||||||||||||||||||||||||    
T  5147413 tactccctccgtcccattttaactgagtcttt 5147444  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 85
Target Start/End: Complemental strand, 15898668 - 15898637
Alignment:
Q  54 tactccctccgtcccattttaactgagtcttt 85  Q
    |||||||||||||||||||||| |||||||||    
T  15898668 tactccctccgtcccattttaaatgagtcttt 15898637  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 24131318 - 24131351
Alignment:
Q  54 tactccctccgtcccattttaactgagtcttttg 87  Q
    ||||||||||||||||||||||||||||| ||||    
T  24131318 tactccctccgtcccattttaactgagtcatttg 24131351  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 36748342 - 36748310
Alignment:
Q  50 taactactccctccgtcccattttaactgagtc 82  Q
    |||||||||||||||||||| ||||||||||||    
T  36748342 taactactccctccgtcccagtttaactgagtc 36748310  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 80
Target Start/End: Complemental strand, 314619 - 314592
Alignment:
Q  53 ctactccctccgtcccattttaactgag 80  Q
    ||||||||||||||||||||||||||||    
T  314619 ctactccctccgtcccattttaactgag 314592  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 85
Target Start/End: Original strand, 6972461 - 6972488
Alignment:
Q  58 ccctccgtcccattttaactgagtcttt 85  Q
    ||||||||||||||||||||||||||||    
T  6972461 ccctccgtcccattttaactgagtcttt 6972488  T

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Target: chr7 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 37264508 - 37264469
Alignment:
Q  48 gttaactactccctccgtcccattttaactgagtcttttg 87  Q
    ||||| |||||||||||||||||||||| |||| ||||||    
T  37264508 gttaattactccctccgtcccattttaagtgagccttttg 37264469  T

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Target: chr6 (Bit Score: 28; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 80
Target Start/End: Complemental strand, 15325338 - 15325311
Alignment:
Q  53 ctactccctccgtcccattttaactgag 80  Q
    ||||||||||||||||||||||||||||    
T  15325338 ctactccctccgtcccattttaactgag 15325311  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 80
Target Start/End: Original strand, 33921385 - 33921412
Alignment:
Q  53 ctactccctccgtcccattttaactgag 80  Q
    ||||||||||||||||||||||||||||    
T  33921385 ctactccctccgtcccattttaactgag 33921412  T

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