View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275-Insertion-2 (Length: 304)
Name: NF1275-Insertion-2
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-130
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 52491174 - 52490890
Alignment:
| Q |
8 |
caaggttcatttcacagccccatcaaacgtccgccgtgtgttgattagcscacctctctctggtgaccttcgttcaaagtacaacgtgcgttctcttccc |
107 |
Q |
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| T |
52491174 |
caaggttcatttcaccgccccatcaaacgtccgtcgtgtgttgattagcgcacctctctctggtgaccttcgttcaaagtacatcgtgcgttctcttccc |
52491075 |
T |
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| Q |
108 |
gttcgtaaggaggatgaagttcaggttgtgagaggaaccttcaaaggacgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcattatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491074 |
gttcgtaaggaggatgaagttcaggttgtgagaggaaccttcaagggacgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcattat- |
52490976 |
T |
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| Q |
208 |
caaaacatcatgcaagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgtcactagaatttca |
304 |
Q |
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| T |
52490975 |
-----------gcaagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgttactagaatttca |
52490890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 2468499 - 2468618
Alignment:
| Q |
79 |
gttcaaagtacaacgtgcgttctcttcccgttcgtaaggaggatgaagttcaggttgtgagaggaaccttcaaaggacgtgaagggaaggttgtgcaagt |
178 |
Q |
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| T |
2468499 |
gttcaaagtacaacatgcgttctcatcctgttcgcaaggatgattaagttca-----tgggaggaaccttcaagggacgtgaaggggagattgtgcaagt |
2468593 |
T |
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| Q |
179 |
ttatcgcaggaaatgggtgattcat |
203 |
Q |
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|||| | |||||||||||||||||| |
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| T |
2468594 |
ttattgaaggaaatgggtgattcat |
2468618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 2468780 - 2468862
Alignment:
| Q |
220 |
caagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgtcactagaattt |
302 |
Q |
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| T |
2468780 |
caagttttctcctgaagacattatgcaaaacgttgattagtttaatcatattattacttttggttgtattgtttctagaattt |
2468862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 5404230 - 5404425
Alignment:
| Q |
8 |
caaggttcatttcacagccccatcaaacgtccgccgtgtgttgattagcscacctctctctggtgaccttcgttcaaagtacaacgtgcgttctcttccc |
107 |
Q |
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||||| ||||||||| |||||||||| |||||| ||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||||||||||||| |
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| T |
5404230 |
caaggctcatttcaccgccccatcaagcgtccgtcgtgtgttgatgagcgcacctctttccggtgacctccgttcaaagtacaacgtgcgttctcttccc |
5404329 |
T |
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| Q |
108 |
gttcgtaaggaggatgaagttcaggttgtgagaggaaccttcaaaggacgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcat |
203 |
Q |
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| T |
5404330 |
gttcgcaaagatgatgaagtgcaggttgtgagaggaaccttcaagggacgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcat |
5404425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 5404587 - 5404666
Alignment:
| Q |
220 |
caagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgtcactagaa |
299 |
Q |
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| T |
5404587 |
caagtttgctcctgaagacattatgcaaaacgttgattaatttaatcctattattacttttggttgtattgttactagaa |
5404666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 42219893 - 42219705
Alignment:
| Q |
15 |
catttcacagccccatcaaacgtccgccgtgtgttgattagcscacctctctctggtgaccttcgttcaaagtacaacgtgcgttctcttcccgttcgta |
114 |
Q |
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|||||||| |||||||||| ||||||||||| | || ||| |||| ||||| || || || || || |||||||| ||||| | || ||||| | |
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| T |
42219893 |
catttcacggccccatcaagtctccgccgtgtgataatgagcgcaccactctccaccgatctccgatccaaatacaacgtccgttccataccagttcgca |
42219794 |
T |
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| Q |
115 |
aggaggatgaagttcaggttgtgagaggaaccttcaaaggacgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcat |
203 |
Q |
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| T |
42219793 |
aagacgatgaagttcaagtcgttagaggaacattcaaaggccgtgaaggtaaaatcgttcaagtttatcgcaaaaaatgggttattcat |
42219705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 30927150 - 30927048
Alignment:
| Q |
36 |
gtccgccgtgtgttgattagcscacctctctctggtgaccttcgttcaaagtacaacgtgcgttctcttcccgttcgtaaggaggatgaagttcaggttg |
135 |
Q |
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| T |
30927150 |
gtccgtcgtgtgttgatgagcgaacctctctccggtgaccttctttcaaagtacaacgtgcattctcttcccgttcgtaaggaggatgaagttcaggttg |
30927051 |
T |
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| Q |
136 |
tga |
138 |
Q |
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| T |
30927050 |
tga |
30927048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 26365376 - 26365328
Alignment:
| Q |
155 |
acgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcat |
203 |
Q |
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| T |
26365376 |
acgtgaagggaaggttgtgcaagtttatggcaggaaatggatgattcat |
26365328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 39928 - 39849
Alignment:
| Q |
220 |
caagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgtcactagaa |
299 |
Q |
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| T |
39928 |
caagtttgctcctgaagacattatgcaaaacgttgattagtttaattatattattacttttggttgtattgttactagaa |
39849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 27447430 - 27447509
Alignment:
| Q |
220 |
caagtttgcttctgaagacattatgctaaatgttgattagtttaatcatattattacttttgattgtattgtcactagaa |
299 |
Q |
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| T |
27447430 |
caagtttgctcctgaagacattatgcaaaacgttgattagtttaattatattattacttttggttgtattgttactagaa |
27447509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 45229096 - 45229144
Alignment:
| Q |
155 |
acgtgaagggaaggttgtgcaagtttatcgcaggaaatgggtgattcat |
203 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45229096 |
acgtgaagggaaggttgtgcaagtttatggcaggaaatgggtgattcat |
45229144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 3085621 - 3085460
Alignment:
| Q |
9 |
aaggttcatttcacagccccatcaaacgtccgccgtgtgttgattagcscacctctctctggtgaccttcgttcaaagtacaacgtgcgttctcttcccg |
108 |
Q |
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|||| ||||||||| || ||||||| |||||||||||| || || ||| |||| ||||| | || || || || ||||||||||| ||||| | || | |
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| T |
3085621 |
aaggctcatttcacggcgccatcaagcgtccgccgtgtcttaatgagcgcaccactctccgccgatctccgatccaagtacaacgtccgttcaatgcctg |
3085522 |
T |
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| Q |
109 |
ttcgtaaggaggatgaagttcaggttgtgagaggaaccttcaaaggacgtgaagggaaggtt |
170 |
Q |
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|||| || || || |||||||||||||| | ||||| |||||||| |||||||| |||||| |
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| T |
3085521 |
ttcgcaaagacgacgaagttcaggttgttcgtggaacattcaaaggccgtgaaggtaaggtt |
3085460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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