View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275-Insertion-3 (Length: 396)
Name: NF1275-Insertion-3
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 11030450 - 11030064
Alignment:
| Q |
8 |
ttttgtttaccatatattccggttctcatagtgccttcgaattttctctttgcattagtattatttatgttactatttaatgattaacattttagttttg |
107 |
Q |
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| T |
11030450 |
ttttgtttaccatatattccggttctcatagtgccttcaaattttctctttgcatta-tattatttatgctactatttaataattaacattttatttttg |
11030352 |
T |
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| Q |
108 |
cctgatagcatcggagtattgaagatctatagagcgtagatgctaattgaatttggtgtattccggtgttagacacgcgtctttgtctgacatcggtaca |
207 |
Q |
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| T |
11030351 |
cctgatagcatgagagtattgaagatctataaagcaaagatgctaattgtatttggtgcattccggtgttagacacgtgtcgatgtctgacatctgtaca |
11030252 |
T |
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| Q |
208 |
atatgtgtcggataattcatacatgtatattttggtgtcgatgtccaatgttgttgacactagctgtgtcgatgtttctttgtcgttttcgttgcccgtg |
307 |
Q |
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| T |
11030251 |
atatgtgtcggaaaattcatacatgtatatttcggtgtcgatgtccaatgttgttgacactagctgtgtcgatgtttctttgtcattttcgttgcccgcg |
11030152 |
T |
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| Q |
308 |
ttagaatttgtggttaactattgtaacttttatgacctaac-tcatttgattggattacattagaccatttttgctttactatttctt |
394 |
Q |
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| T |
11030151 |
ttagaatttgtggttaactattgaaacttttatgacctaacttcattttattggatttcatgagatcatttttgctttactatttctt |
11030064 |
T |
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