View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275-Insertion-4 (Length: 287)
Name: NF1275-Insertion-4
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 35256625 - 35256345
Alignment:
| Q |
7 |
accttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccat |
106 |
Q |
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| T |
35256625 |
accttttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccat |
35256526 |
T |
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| Q |
107 |
tgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatcatgatggtggctgc |
206 |
Q |
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| T |
35256525 |
tgtcctgtatagtaatcaccattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatcatggtggtggctgc |
35256426 |
T |
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| Q |
207 |
cttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttg |
287 |
Q |
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| T |
35256425 |
cttcttcatcgtctgcatttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttg |
35256345 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 19643115 - 19643249
Alignment:
| Q |
11 |
tttccctttgtttttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccattgtc |
110 |
Q |
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|||||| | ||||||||||||||||||| |||||| || || || ||||| ||||||| || || |||| |||||||| || || || ||||||| || |
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| T |
19643115 |
tttcccatagtttttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgggaagttatcagcccattctc |
19643214 |
T |
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| Q |
111 |
ctgtatagtaatcaccattggaaagaaccttctct |
145 |
Q |
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| T |
19643215 |
ctttatagtaatctccattgggtagaaccctctct |
19643249 |
T |
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