View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275-Insertion-5 (Length: 72)

Name: NF1275-Insertion-5
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275-Insertion-5
NF1275-Insertion-5
[»] chr5 (7 HSPs)
chr5 (8-64)||(39676738-39676794)
chr5 (8-64)||(10046840-10046896)
chr5 (8-64)||(10867195-10867251)
chr5 (8-64)||(10873061-10873117)
chr5 (8-64)||(10878132-10878188)
chr5 (8-64)||(10883203-10883259)
chr5 (8-64)||(10887118-10887174)
[»] chr8 (1 HSPs)
chr8 (8-64)||(30708477-30708533)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 39676738 - 39676794
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39676738 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttc 39676794  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10046840 - 10046896
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10046840 atgcaatgggaatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttc 10046896  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10867195 - 10867251
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10867195 atgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10867251  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 10873117 - 10873061
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10873117 atgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10873061  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 10878188 - 10878132
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10878188 atgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10878132  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 10883259 - 10883203
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10883259 atgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10883203  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 10887174 - 10887118
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10887174 atgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10887118  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 30708533 - 30708477
Alignment:
Q  8 atgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 64  Q
    |||| ||||||||||||||||| ||||||||||| ||||| || |||||| ||||||    
T  30708533 atgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttc 30708477  T

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