View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275-Insertion-7 (Length: 282)

Name: NF1275-Insertion-7
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275-Insertion-7
NF1275-Insertion-7
[»] chr8 (2 HSPs)
chr8 (9-282)||(42788874-42789147)
chr8 (9-282)||(42798412-42798685)
[»] chr6 (1 HSPs)
chr6 (83-196)||(34566633-34566746)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-149
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 42789147 - 42788874
Alignment:
Q  9 tatcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagtgata 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42789147 tatcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagata 42789048  T
Q  109 tgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789047 tgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggag 42788948  T
Q  209 tcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788947 tcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg 42788874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-149
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 42798685 - 42798412
Alignment:
Q  9 tatcttcacaaacacagcaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagtgata 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42798685 tatcttcacaaacacaacaatttttggctaatatgctatcagacaaaaagtttactgagaagtatattaacattaatagggaaagattgaagaagagata 42798586  T
Q  109 tgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42798585 tgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaaggag 42798486  T
Q  209 tcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42798485 tcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctccggggtg 42798412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 34566746 - 34566633
Alignment:
Q  83 aatagggaaagattgaagaagtgatatgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttgga 182  Q
    ||||| |||||||| | |||  ||||||||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| |||||||||||||    
T  34566746 aatagagaaagattaaggaaaagatatgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttgga 34566647  T
Q  183 tgaatttgagtcca 196  Q
    ||||| ||||||||    
T  34566646 tgaatatgagtcca 34566633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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