View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1275-Insertion-9 (Length: 511)

Name: NF1275-Insertion-9
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1275-Insertion-9
NF1275-Insertion-9
[»] chr1 (13 HSPs)
chr1 (232-363)||(38837975-38838104)
chr1 (393-511)||(2476822-2476940)
chr1 (393-511)||(45240596-45240714)
chr1 (393-511)||(48386601-48386719)
chr1 (393-511)||(48405780-48405898)
chr1 (393-511)||(8469776-8469894)
chr1 (393-511)||(17679759-17679877)
chr1 (393-511)||(31469583-31469701)
chr1 (393-511)||(33165826-33165944)
chr1 (393-511)||(17784819-17784937)
chr1 (393-511)||(51521648-51521766)
chr1 (393-456)||(47299049-47299112)
chr1 (11-103)||(38814158-38814250)
[»] chr7 (5 HSPs)
chr7 (393-511)||(36519964-36520082)
chr7 (393-511)||(22192665-22192783)
chr7 (393-511)||(22658132-22658250)
chr7 (393-511)||(26813593-26813711)
chr7 (393-511)||(32128740-32128858)
[»] chr6 (7 HSPs)
chr6 (393-511)||(17959757-17959875)
chr6 (393-511)||(34840039-34840157)
chr6 (393-511)||(632972-633090)
chr6 (393-511)||(6378996-6379114)
chr6 (393-511)||(8220402-8220520)
chr6 (393-505)||(24931763-24931875)
chr6 (393-496)||(18640861-18640964)
[»] chr5 (6 HSPs)
chr5 (393-511)||(29618095-29618213)
chr5 (393-511)||(32975063-32975181)
chr5 (393-511)||(40890355-40890473)
chr5 (396-511)||(27943953-27944068)
chr5 (393-511)||(4578451-4578569)
chr5 (393-511)||(9273767-9273885)
[»] chr4 (9 HSPs)
chr4 (393-511)||(3616947-3617065)
chr4 (393-511)||(8993244-8993362)
chr4 (393-511)||(13112022-13112140)
chr4 (393-511)||(2213782-2213900)
chr4 (393-511)||(3531802-3531920)
chr4 (393-511)||(46916009-46916127)
chr4 (393-511)||(16173513-16173631)
chr4 (393-511)||(33605591-33605709)
chr4 (393-511)||(34436637-34436755)
[»] chr3 (15 HSPs)
chr3 (393-511)||(17467972-17468090)
chr3 (393-511)||(30416923-30417041)
chr3 (393-511)||(33189339-33189457)
chr3 (393-511)||(6047189-6047307)
chr3 (393-511)||(25789274-25789392)
chr3 (393-511)||(25831231-25831349)
chr3 (393-511)||(47145623-47145741)
chr3 (393-511)||(42562359-42562477)
chr3 (393-508)||(30689617-30689732)
chr3 (393-511)||(51428548-51428666)
chr3 (393-511)||(33750137-33750255)
chr3 (393-511)||(42600012-42600130)
chr3 (410-511)||(50018464-50018565)
chr3 (393-508)||(21226721-21226836)
chr3 (393-508)||(21230932-21231047)
[»] chr2 (7 HSPs)
chr2 (393-511)||(7586996-7587114)
chr2 (393-511)||(30821076-30821194)
chr2 (393-511)||(8853513-8853631)
chr2 (393-511)||(12856475-12856593)
chr2 (393-511)||(22350107-22350225)
chr2 (393-511)||(40880232-40880350)
chr2 (394-511)||(31206405-31206522)
[»] chr8 (5 HSPs)
chr8 (393-511)||(1956716-1956834)
chr8 (393-511)||(15055091-15055209)
chr8 (393-511)||(17743143-17743261)
chr8 (393-509)||(13816393-13816509)
chr8 (393-511)||(30531043-30531161)
[»] scaffold1240 (1 HSPs)
scaffold1240 (393-511)||(1266-1384)
[»] scaffold0004 (1 HSPs)
scaffold0004 (393-511)||(104299-104417)
[»] scaffold0100 (1 HSPs)
scaffold0100 (393-496)||(29057-29160)
[»] scaffold0007 (1 HSPs)
scaffold0007 (393-484)||(167763-167854)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 232 - 363
Target Start/End: Complemental strand, 38838104 - 38837975
Alignment:
Q  232 caggattaagtgcaagccactcggtgtcaaacccaataacctttgtcttatgattggaattacttgttgaaccaaaagaaaaaatatggtcatccaccac 331  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38838104 caggattaggtgcaagccactcggtgtcaaacccaataacctttgtcttatgattggaattacttgttgaaccaaaagaaaaaatatggtcatccaccac 38838005  T
Q  332 attctgcttgtctgtatagtaatggttttgat 363  Q
    ||||||||| ||||  ||||||||||||||||    
T  38838004 attctgcttatctg--tagtaatggttttgat 38837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 2476940 - 2476822
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  2476940 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 2476841  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  2476840 agatccactaccttcctct 2476822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 45240596 - 45240714
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  45240596 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 45240695  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  45240696 agatccactaccttcctct 45240714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 48386719 - 48386601
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  48386719 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 48386620  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  48386619 agatccactaccttcctct 48386601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 48405780 - 48405898
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  48405780 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 48405879  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  48405880 agatccactaccttcctct 48405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 8469776 - 8469894
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||    
T  8469776 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgattctttggtttgccactgcatgatctctatttaaatattatctactacg 8469875  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  8469876 agatccactaccttcctct 8469894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 17679877 - 17679759
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  17679877 gaaacattgcaacatcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactatg 17679778  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  17679777 agatccactaccttcctct 17679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 31469583 - 31469701
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  31469583 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 31469682  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  31469683 agatccactaccttcctct 31469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 33165826 - 33165944
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  33165826 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 33165925  T
Q  493 agatccactaccttcctct 511  Q
    |||| |||||| |||||||    
T  33165926 agatgcactactttcctct 33165944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 17784819 - 17784937
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||||||| |||||| |||||||  |||||||||||||||| ||||||||| || ||||    
T  17784819 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcgtcaattagtcttcggtttgctgctgcatgatctctattgaaatattttctagtacg 17784918  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  17784919 agatgcactaccttcctct 17784937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 51521648 - 51521766
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    |||| |||||||| ||||||||||  ||||||| ||||||||||||||| |||||||||||||||    ||||||||||||| |||||||||  | ||||    
T  51521648 gaaagattgcatcgtcatatgtaggctcattggaaaagtagtcgtcaattagtctttggtttgcccgctcatgatctctattgaaatattttccagtacg 51521747  T
Q  493 agatccactaccttcctct 511  Q
    |||| || |||||||||||    
T  51521748 agatgcaataccttcctct 51521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 47299112 - 47299049
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgc 456  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  47299112 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgc 47299049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 38814250 - 38814158
Alignment:
Q  11 tcttcatagcagtagcagccaatggtgctagttccacagcatttcgacatccaaacccgtagttcttctccaacttagctacattatctttga 103  Q
    |||||||| || | ||||| || ||| | ||||| |||||||||| ||||||||| || || | ||||||||||||||| | ||| |||||||    
T  38814250 tcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttga 38814158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 36519964 - 36520082
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  36519964 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 36520063  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  36520064 agatccactaccttcctct 36520082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 22192665 - 22192783
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  22192665 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 22192764  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  22192765 agatccactaccttcctct 22192783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 22658132 - 22658250
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||| ||| ||||||||||  || |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  22658132 gaaacattggatcgtcatatgtaggctcgttggcaaagtagtcgtcaatgagtctttggtttgtcgctgcatgatctctatttaaatattttctactacg 22658231  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  22658232 agatccactaccttcctct 22658250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 26813593 - 26813711
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||| ||| || |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  26813593 gaaacattgtatcgtcctatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattaaaatattttctagtacg 26813692  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  26813693 agatgcactaccttcctct 26813711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 32128858 - 32128740
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    |||| |||||||  || |||||||  ||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  32128858 gaaatattgcattgtcgtatgtaggctcattagcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattaaaatattttctagtacg 32128759  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  32128758 agatgcactaccttcctct 32128740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 17959875 - 17959757
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  17959875 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 17959776  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  17959775 agatccactaccttcctct 17959757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 34840039 - 34840157
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  34840039 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 34840138  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  34840139 agatccactaccttcctct 34840157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 632972 - 633090
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  632972 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 633071  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  633072 agatccactaccttcctct 633090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 6379114 - 6378996
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  6379114 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 6379015  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  6379014 agatccactaccttcctct 6378996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 8220402 - 8220520
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  8220402 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactatg 8220501  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  8220502 agatccactaccttcctct 8220520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 393 - 505
Target Start/End: Complemental strand, 24931875 - 24931763
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || ||| |||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  24931875 gaaacattgcatcgtcgtatttaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattaaaatattttctagtacg 24931776  T
Q  493 agatccactacct 505  Q
    |||| ||||||||    
T  24931775 agatgcactacct 24931763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 496
Target Start/End: Original strand, 18640861 - 18640964
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||| ||| || |||||||  |||||||  |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  18640861 gaaacattgaatcgtcgtatgtaggctcattggccaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 18640960  T
Q  493 agat 496  Q
    ||||    
T  18640961 agat 18640964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 29618213 - 29618095
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  29618213 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 29618114  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  29618113 agatccactaccttcctct 29618095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 32975181 - 32975063
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32975181 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 32975082  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  32975081 agatccactaccttcctct 32975063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 40890355 - 40890473
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  40890355 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 40890454  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  40890455 agatccactaccttcctct 40890473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 396 - 511
Target Start/End: Original strand, 27943953 - 27944068
Alignment:
Q  396 acattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacgaga 495  Q
    |||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  27943953 acattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacgaga 27944052  T
Q  496 tccactaccttcctct 511  Q
    ||||||||||||||||    
T  27944053 tccactaccttcctct 27944068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 4578451 - 4578569
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||   ||| || ||||||||| ||||| ||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  4578451 gaaacattgcatcgtcgtatgtaggtgcatcggcaaagtagtcatcaattagtctttggtttgcagctgcatgatctctattgaaatattttctactacg 4578550  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  4578551 agatccactaccttcctct 4578569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 9273885 - 9273767
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||| | ||||||||||||| || ||||||||||||| ||||||||| || |||     
T  9273885 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattattctttggtttgccgctccatgatctctattgaaatattttctagtacc 9273786  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||| ||||||||    
T  9273785 agatgcactatcttcctct 9273767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 3617065 - 3616947
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  3617065 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 3616966  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  3616965 agatccactaccttcctct 3616947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 8993244 - 8993362
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  8993244 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 8993343  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  8993344 agatccactaccttcctct 8993362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 13112022 - 13112140
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  13112022 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 13112121  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  13112122 agatccactaccttcctct 13112140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 2213900 - 2213782
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  2213900 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 2213801  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  2213800 agatccactaccttcctct 2213782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 3531920 - 3531802
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  3531920 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttagatattttctactacg 3531821  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  3531820 agatccactaccttcctct 3531802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 46916127 - 46916009
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  46916127 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcggcaatgagtctttggtttgcccctgcatgatctctatttaaatattttctactacg 46916028  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  46916027 agatccactaccttcctct 46916009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 16173631 - 16173513
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| |||||| |||  ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||    
T  16173631 gaaacattgcatcgtcatatataggctcattggcaaagtagtcgtcaatgagtctttggtttgcttctgcatgatctctatttaaatattttctactacg 16173532  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  16173531 agatccactaccttcctct 16173513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 33605591 - 33605709
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || ||||||   ||||||| |||| |||||||||| |||||||||||| || |||||||||||||||||||||||||| || ||||    
T  33605591 gaaacattgcatcgtcgtatgtacgctcattggcaaagcagtcgtcaattagtctttggttttccgctgcatgatctctatttaaatattttctagtacg 33605690  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  33605691 agatgcactaccttcctct 33605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 34436755 - 34436637
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||| ||||||| ||||||||||||||  |||||||||||||||| ||||||||| || ||||    
T  34436755 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagccgtcaattagtctttggtttgctgctgcatgatctctattgaaatattttctagtacg 34436656  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  34436655 agatgcactaccttcctct 34436637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 17467972 - 17468090
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  17467972 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 17468071  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  17468072 agatccactaccttcctct 17468090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 30417041 - 30416923
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  30417041 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 30416942  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  30416941 agatccactaccttcctct 30416923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 33189457 - 33189339
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  33189457 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 33189358  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  33189357 agatccactaccttcctct 33189339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 6047307 - 6047189
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  6047307 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttagatattttctactacg 6047208  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  6047207 agatccactaccttcctct 6047189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 25789392 - 25789274
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  25789392 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 25789293  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  25789292 agatccactaccttcctct 25789274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 25831349 - 25831231
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  25831349 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 25831250  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  25831249 agatccactaccttcctct 25831231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 47145623 - 47145741
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  47145623 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 47145722  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  47145723 agatccactaccttcctct 47145741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 42562359 - 42562477
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  42562359 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcatcaacgagtctttggtttgccgctgcatgatctctatttaaatattttctactatg 42562458  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  42562459 agatccactaccttcctct 42562477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 393 - 508
Target Start/End: Complemental strand, 30689732 - 30689617
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||| || ||||    
T  30689732 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgttgcatgatctctattgaaatattttctagtacg 30689633  T
Q  493 agatccactaccttcc 508  Q
    |||| |||||||||||    
T  30689632 agatgcactaccttcc 30689617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 51428548 - 51428666
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  51428548 gaaacattgcatcttcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 51428647  T
Q  493 agatccactaccttcctct 511  Q
    |||| | ||||||||||||    
T  51428648 agatgcgctaccttcctct 51428666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 33750137 - 33750255
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||| ||| |||||||||||| || |||||||||||||||| ||||||||| || ||||    
T  33750137 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcgttaattagtctttggttttccgctgcatgatctctattgaaatattttctagtacg 33750236  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  33750237 agatgcactaccttcctct 33750255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 42600130 - 42600012
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||   ||| || ||||||||| ||||| ||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  42600130 gaaacattgcatcgtcgtatgtaggtgcatcggcaaagtagtcatcaattagtctttggtttgcagctgcatgatctctattgaaatattttctactacg 42600031  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  42600030 agatccactaccttcctct 42600012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 410 - 511
Target Start/End: Original strand, 50018464 - 50018565
Alignment:
Q  410 tatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacgagatccactaccttcct 509  Q
    |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||||||||    
T  50018464 tatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacgagatgcactaccttcct 50018563  T
Q  510 ct 511  Q
    ||    
T  50018564 ct 50018565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 508
Target Start/End: Original strand, 21226721 - 21226836
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  | ||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||| | ||||||| ||||| |    
T  21226721 gaaacattgcatcgtcatatgtaggcttattggcaaagtagtcgttaattagtctttggtttgccgctgcatgatctctattgagatattttctactatg 21226820  T
Q  493 agatccactaccttcc 508  Q
    || | ||||| |||||    
T  21226821 aggtgcactatcttcc 21226836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 508
Target Start/End: Complemental strand, 21231047 - 21230932
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||| ||||||||||| ||| |||||| || |||||| | ||||||| |||||||    
T  21231047 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattagtctttggttcgccgctgcataatatctattgagatattttctactacg 21230948  T
Q  493 agatccactaccttcc 508  Q
    | || ||||| |||||    
T  21230947 acatgcactatcttcc 21230932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 7587114 - 7586996
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7587114 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 7587015  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  7587014 agatccactaccttcctct 7586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 30821194 - 30821076
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  30821194 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 30821095  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  30821094 agatccactaccttcctct 30821076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 8853513 - 8853631
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  8853513 gaaacattgcatcgtcatatgtaggctcattggtaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 8853612  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  8853613 agatccactaccttcctct 8853631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 12856475 - 12856593
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  12856475 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgcccctgcatgatctctctttaaatattttctactacg 12856574  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  12856575 agatccactaccttcctct 12856593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 22350225 - 22350107
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  22350225 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttagatattttctactacg 22350126  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  22350125 agatccactaccttcctct 22350107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 40880350 - 40880232
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    |||||||||||||||| |||||||  ||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| || ||||    
T  40880350 gaaacattgcatcatcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctacatgatctctattgaaatattttctagtacg 40880251  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  40880250 agatgcactaccttcctct 40880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 394 - 511
Target Start/End: Complemental strand, 31206522 - 31206405
Alignment:
Q  394 aaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacga 493  Q
    |||||||||||| ||||||||||  ||||||| ||||||||||||||| ||||||| |||| || || ||||||||||||| ||||||||| || |||||    
T  31206522 aaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattagtctttagttttccgctacatgatctctattgaaatattttctagtacga 31206423  T
Q  494 gatccactaccttcctct 511  Q
    ||| ||||||||||||||    
T  31206422 gatgcactaccttcctct 31206405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 1956834 - 1956716
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    |||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  1956834 gaaacattgcatcgccatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactacg 1956735  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  1956734 agatccactaccttcctct 1956716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 15055091 - 15055209
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||     
T  15055091 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaatgagtctttggtttgccgctgcatgatctctatttaaatattttctactaca 15055190  T
Q  493 agatccactaccttcctct 511  Q
    |||||||||||||||||||    
T  15055191 agatccactaccttcctct 15055209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 17743143 - 17743261
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  17743143 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 17743242  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  17743243 agatgcactaccttcctct 17743261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 393 - 509
Target Start/End: Original strand, 13816393 - 13816509
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    |||||||||||||||| |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  13816393 gaaacattgcatcatcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 13816492  T
Q  493 agatccactaccttcct 509  Q
    |||| ||||||||||||    
T  13816493 agatgcactaccttcct 13816509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 30531161 - 30531043
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||| || ||||    
T  30531161 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcatcaattagtctttggtttgccgctgcatgatctctattgaaatattttctagtacg 30531062  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  30531061 agatgcactaccttcctct 30531043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 393 - 511
Target Start/End: Complemental strand, 1384 - 1266
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||||    
T  1384 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccactgcatgatctctattgaaatattttctagtacg 1285  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  1284 agatgcactaccttcctct 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 393 - 511
Target Start/End: Original strand, 104299 - 104417
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||| || || |    
T  104299 gaaacattgcatcgtcgtatgtaggctcattggcaaagtagtcgtcaattagtctttggtttgccgctgcataatctctattaaaatattttctagtaag 104398  T
Q  493 agatccactaccttcctct 511  Q
    |||| ||||||||||||||    
T  104399 agatgcactaccttcctct 104417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 29160 - 29057
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatattttatactacg 492  Q
    ||||||||||||| || |||||||  ||||||| ||| ||||||||||| |||||||||||| || |||||||||||||||| ||||||||| || ||||    
T  29160 gaaacattgcatcgtcgtatgtaggctcattggcaaattagtcgtcaattagtctttggttttccgctgcatgatctctattgaaatattttctagtacg 29061  T
Q  493 agat 496  Q
    ||||    
T  29060 agat 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 484
Target Start/End: Complemental strand, 167854 - 167763
Alignment:
Q  393 gaaacattgcatcatcatatgtagaatcattgggaaagtagtcgtcaatgagtctttggtttgccactgcatgatctctatttaaatatttt 484  Q
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T  167854 gaaacattgcatcgtcatatgtaggctcattggcaaagtagtcgtcaattagtctttggttttccgctgcatgatctctattgagatatttt 167763  T

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