View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_high_11 (Length: 343)
Name: NF12750_high_11
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 52378642 - 52378311
Alignment:
| Q |
18 |
ggtgaagagtagacaagaaaaatacgaaagtgataaaaataaagtgtaacatatgatatgatgtcaatattttgatgtttaaataatattgtttacacac |
117 |
Q |
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| T |
52378642 |
ggtgaagagtagacaagaaaaatacgaaagtgataaaaataaagtgtaacatatgatatgatgtcaatattttgatgtttaaataatattgtttacacac |
52378543 |
T |
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| Q |
118 |
ggaaaacatggttgatgtctatcgtccttt-nnnnnnnttgttgatgtctatcaaagaataaagattatgatccaataaataaattaaaggatttgatag |
216 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52378542 |
ggaaaacatggttgatgtctatcgtcctttaaaaaaaatggttgatgtctatcaaagaataaagattatgatcc----aataaattaaaggatttgatag |
52378447 |
T |
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| Q |
217 |
atttatcgtacaatcacatacgccattttctctcaatacatcccaatagagagag--------------aaaaatagtttccaaaggaggagcacgccat |
302 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52378446 |
atttatcggacaatcacatacgccattttctctcaatacatcccaatagagagagagagagagagagaaaaaaatagtttccaaaggaggagcacgccat |
52378347 |
T |
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| Q |
303 |
tttagcttgtgtgtcttattcttttcgtcctttgct |
338 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
52378346 |
tttagcttgtgtgtcttattcttttcgtcttttgct |
52378311 |
T |
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