View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_high_13 (Length: 307)
Name: NF12750_high_13
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_high_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 37811746 - 37811439
Alignment:
| Q |
1 |
agttaagctcataacctcattctaaattcnnnnnnnn--caaggttaacttttcaacttgatttgtttggaagctnnnnnnnnntcattttgtaaaacaa |
98 |
Q |
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| T |
37811746 |
agttaagctcataacctcattctaaattcttttttttttcaaggttaacttttcagcttgatttgtttggaagctaaaaaaaa-tcattttgtaaaacaa |
37811648 |
T |
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| Q |
99 |
agaaaagaatgaagaaaagatcagatgcgtaaatgattttatttgctcttaccaatgcctatttcaacttcaacaattttacggcaatacaggaaagaac |
198 |
Q |
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| T |
37811647 |
agaaaagaatgaagaaaagatcagatgcgtaaatgattttatttgctcttaccaatgcctatttcaacttcaacaattttacggcaatacaggaaagaac |
37811548 |
T |
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| Q |
199 |
aactgcataaaaatgggtatattttagggaagatatatgcttccaatttaataaccaatgannnnnnnnngtaaattgttttccattgtttatttttcct |
298 |
Q |
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| T |
37811547 |
aactgcataaaaatgggtatattttagggaagatatatgcttccaatttaataaccaatgatttttttttgtaaattgttttccattgtttatttttcct |
37811448 |
T |
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| Q |
299 |
ttcttgttc |
307 |
Q |
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||||||||| |
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| T |
37811447 |
ttcttgttc |
37811439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 307
Target Start/End: Original strand, 42059987 - 42060255
Alignment:
| Q |
38 |
caaggttaacttttcaacttgatttgtttggaagctnnnnnnnnntcattttgtaaaacaaagaaaagaatgaagaaaagatcagatgcgtaaatgattt |
137 |
Q |
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| T |
42059987 |
caaggttaacttttcagcttgatttgtttggaagctaaaaaaaaatcattttgtaaaacaaagaaaagaacgaagaaaaggtcagatgcataaataattt |
42060086 |
T |
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| Q |
138 |
tatttgctcttaccaatgcctatttcaacttcaacaattttacggcaatacaggaaagaacaactgcataaaaatgggtatattttagggaagatatatg |
237 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||| | ||||||||||| |
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| T |
42060087 |
tatttgctcttaccaaggactatttcaacttcaaccattttacagcaatacaggaaagaacagctgcat-aaaatgggtatatttttgagaagatatatg |
42060185 |
T |
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| Q |
238 |
cttccaatttaataaccaatgannnnnnnnngtaaattgttttccattgtttatttttcctttcttgttc |
307 |
Q |
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| T |
42060186 |
cttccaatttaatagccaatgattttttttcataaattgtttttcattgttaatttttcctttcttgttc |
42060255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 110 - 307
Target Start/End: Original strand, 16817 - 17014
Alignment:
| Q |
110 |
aagaaaagatcagatgcgtaaatgattttatttgctcttaccaatgcctatttcaacttcaacaattttacggcaatacaggaaagaacaactgcataaa |
209 |
Q |
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||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
16817 |
aagaaaagatcagatgcataaataaatttatttgctcttaccaaggcctatttcaacttcaacaattttacagcaatacaagaaagaacagctgcataaa |
16916 |
T |
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| Q |
210 |
aatgggtatattttagggaagatatatgcttccaatttaataaccaatgannnnnnnnngtaaattgttttccattgtttatttttcctttcttgttc |
307 |
Q |
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| T |
16917 |
aatgggtatattttagagaagatatatgtttccaatttaataaccaatgattttttttcgtaaattgttttccattgttaatttttcccttcttgttc |
17014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 16758 - 16793
Alignment:
| Q |
38 |
caaggttaacttttcaacttgatttgtttggaagct |
73 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
16758 |
caaggttaacttttcagcttgatttgtttggaagct |
16793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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