View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12750_high_16 (Length: 291)
Name: NF12750_high_16
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_high_16 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 21880412 - 21880205
Alignment:
| Q |
16 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
21880412 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta |
21880313 |
T |
|
| Q |
107 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21880312 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaaatttattgttagggtttgataagtgattatttgggattattcaacaatctta |
21880213 |
T |
|
| Q |
207 |
aactttac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
21880212 |
aactttac |
21880205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 12587414 - 12587207
Alignment:
| Q |
16 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
12587414 |
tcttcctccattcatggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta |
12587315 |
T |
|
| Q |
107 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
12587314 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgagattattcaacaatctta |
12587215 |
T |
|
| Q |
207 |
aactttac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
12587214 |
aactttac |
12587207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 27323308 - 27323221
Alignment:
| Q |
125 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatcttaaacttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |||||| |||||| |
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|
| T |
27323308 |
ttgatattgaatttatgttgattgtgtaaactttattgttagggtttgacaaatgattatttaggattattcaataatcttgaacttt |
27323221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 35036079 - 35036184
Alignment:
| Q |
111 |
ctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttga----taagtgattatttgggattattcaacaatctta |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| || |||||||||||||||| ||| | |
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|
| T |
35036079 |
ctattattactttgttgatattgaatttatgttgatagtgtaaactttattgttagggtttaataattaagtgtttttttgggattattcaacgatcatg |
35036178 |
T |
|
| Q |
207 |
aacttt |
212 |
Q |
| |
|
|||||| |
|
|
| T |
35036179 |
aacttt |
35036184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 27324532 - 27324409
Alignment:
| Q |
16 |
tcttcctccattggtggtgatct---aagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagag |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || || ||| || |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27324532 |
tcttcctccattggtggtgatcttctaagaggtaaacccttttc--taattttatgattttaaacttatttgtttcatttgtttattattgtaatgagag |
27324435 |
T |
|
| Q |
104 |
ttaacatctattattaccttgttgat |
129 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
27324434 |
ttaacatctattatcaccttgttgat |
27324409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 22970213 - 22970420
Alignment:
| Q |
16 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttg---------tttattattgtaatgagagtta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22970213 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta |
22970312 |
T |
|
| Q |
107 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22970313 |
acatctattattaccttgttgatattgaatttatgttgattgtaaaaaatttattgttagggtttgataagtgattatttgagattattcaacaatctta |
22970412 |
T |
|
| Q |
207 |
aactttac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
22970413 |
aactttac |
22970420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 49602964 - 49602761
Alignment:
| Q |
16 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaacttatttgttt---------attattgtaatgagagtta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49602964 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttatatgattttaaacttatttgttttgtttgtttattattgtaatgagagtta |
49602865 |
T |
|
| Q |
107 |
acatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49602864 |
acatctattattaccttgttgatattgaatttatgttgattgtacaaactttattgttagggtttgataagtgattatttgggattattcaacaatctta |
49602765 |
T |
|
| Q |
207 |
aact |
210 |
Q |
| |
|
|||| |
|
|
| T |
49602764 |
aact |
49602761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 6901002 - 6901135
Alignment:
| Q |
81 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6901002 |
tttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataagtga |
6901101 |
T |
|
| Q |
181 |
ttatttgggattattcaacaatcttaaactttac |
214 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |
|
|
| T |
6901102 |
ttatttaggattattcaacaatattaaactttac |
6901135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 6900740 - 6900803
Alignment:
| Q |
16 |
tcttcctccattggtggtgatctaagaggtacactctcttccttatttttatgattttaaactt |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6900740 |
tcttcctccattggtggtgatctaagaggtgcactctcttccttatttttatgattttaaactt |
6900803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 22329848 - 22329731
Alignment:
| Q |
78 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
177 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22329848 |
ttatttgtttgttattgtaatgagagttaacatctattattaagttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
22329749 |
T |
|
| Q |
178 |
tgattatttgggattatt |
195 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22329748 |
tgattatttgggattatt |
22329731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 35360511 - 35360378
Alignment:
| Q |
78 |
ttatttgtttattattgtaatgagagttaacatctattattaccttgttgatattgaatttatgttgattgtgtaaactttattgttagggtttgataag |
177 |
Q |
| |
|
||||||||| |||| |||| | ||||||| | ||||||||||||| |||||| || || ||||||| ||| ||||||||||||||||||| || || |
|
|
| T |
35360511 |
ttatttgttaattacagtaacgtgagttaatttatattattaccttgccgatattaaacttttgttgatagtgataactttattgttagggtttaat-ag |
35360413 |
T |
|
| Q |
178 |
tgattatttgggattattcaacaatcttaaacttt |
212 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
35360412 |
tgtttatttggaattattcaacaattttaaacttt |
35360378 |
T |
|
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