View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_high_21 (Length: 235)
Name: NF12750_high_21
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_high_21 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 45275167 - 45274950
Alignment:
| Q |
18 |
gatgactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactg |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275167 |
gatgactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactg |
45275068 |
T |
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| Q |
118 |
ctgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagca |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275067 |
ctgatatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagca |
45274968 |
T |
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| Q |
218 |
attccatgttcagagttt |
235 |
Q |
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|||||||||||||||||| |
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| T |
45274967 |
attccatgttcagagttt |
45274950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 45271634 - 45271417
Alignment:
| Q |
18 |
gatgactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactg |
117 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
45271634 |
gatgactgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactg |
45271535 |
T |
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| Q |
118 |
ctgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagca |
217 |
Q |
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| T |
45271534 |
ctgatatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagca |
45271435 |
T |
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| Q |
218 |
attccatgttcagagttt |
235 |
Q |
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|||||||||||||||||| |
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| T |
45271434 |
attccatgttcagagttt |
45271417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 45283407 - 45283191
Alignment:
| Q |
19 |
atgactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgc |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||| || |
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| T |
45283407 |
atgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgc |
45283308 |
T |
|
| Q |
119 |
tgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaa |
218 |
Q |
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|||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
45283307 |
tgatatgaggaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaa |
45283208 |
T |
|
| Q |
219 |
ttccatgttcagagttt |
235 |
Q |
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||||||||||||||||| |
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| T |
45283207 |
ttccatgttcagagttt |
45283191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 45294795 - 45294579
Alignment:
| Q |
19 |
atgactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgc |
118 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||||| || |
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| T |
45294795 |
atgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgc |
45294696 |
T |
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| Q |
119 |
tgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaa |
218 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |
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| T |
45294695 |
tgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaa |
45294596 |
T |
|
| Q |
219 |
ttccatgttcagagttt |
235 |
Q |
| |
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|| | ||||||||||| |
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| T |
45294595 |
ttagacgttcagagttt |
45294579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 45303755 - 45303539
Alignment:
| Q |
19 |
atgactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgc |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||||| || |
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| T |
45303755 |
atgactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgc |
45303656 |
T |
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| Q |
119 |
tgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |
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| T |
45303655 |
tgatatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaa |
45303556 |
T |
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| Q |
219 |
ttccatgttcagagttt |
235 |
Q |
| |
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|| | ||||||||||| |
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| T |
45303555 |
ttagacgttcagagttt |
45303539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 38588718 - 38588624
Alignment:
| Q |
87 |
aacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttga |
181 |
Q |
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|||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| ||||| || ||| |||| | || ||||| |||||||| |
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| T |
38588718 |
aacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaatcatgcatggacggatttga |
38588624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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