View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12750_high_7 (Length: 414)
Name: NF12750_high_7
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 404
Target Start/End: Original strand, 50586367 - 50586726
Alignment:
| Q |
33 |
aaaacacaattgaattcaagaatcgaatagtcattcctaagtactccctctagaaaccagtctgcattttcgttccgcttcagtaaagggtttaattaat |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50586367 |
aaaacacaattgaattcaataatcgaatagtcattcctaagtactccctctagaaaccagtctgcattttcgttccgcttcagtaaa------------t |
50586454 |
T |
|
| Q |
133 |
tggaggctcaaatctaagttttctttatctcaacgcttctagatttagttaatcgtcttcatgtaaannnnnnnnnnnnnagtctgccagatggacacag |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
50586455 |
tggaggctcaaatctaagttttctttatctcaacgcttctagatttagttaatcggcttcatgtaaatttttcattttttagtctgccagatggacacag |
50586554 |
T |
|
| Q |
233 |
cagggatttttgcaaaaactcataagatattatatatttcattaaacaataacatggtaatgttttttgatttataactaatcttgtctttgaatgtaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50586555 |
cagggatttttgcaaaaactcataagatattatatatttcattaaacaataacatggtaatgttttttgatttataactaatcttgtctttgaatgtaaa |
50586654 |
T |
|
| Q |
333 |
agctgcattacttgcttcatacgttatttgaattgtcgggatgatggtgaattatttgcagtatatcctttg |
404 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50586655 |
agctgcattacttgtttcatacgttatttgaattgtcgggatgatggtgaattatttgcagtatatcctttg |
50586726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University