View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12750_low_1 (Length: 591)

Name: NF12750_low_1
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12750_low_1
NF12750_low_1
[»] chr6 (35 HSPs)
chr6 (171-591)||(1838660-1839074)
chr6 (13-166)||(1838475-1838628)
chr6 (348-591)||(1822094-1822334)
chr6 (238-537)||(1841591-1841892)
chr6 (13-166)||(14790620-14790771)
chr6 (13-166)||(14795648-14795799)
chr6 (13-122)||(20527296-20527407)
chr6 (13-122)||(27649104-27649214)
chr6 (13-93)||(32704418-32704498)
chr6 (301-435)||(6515867-6516002)
chr6 (13-122)||(19664799-19664909)
chr6 (306-457)||(13035513-13035665)
chr6 (292-441)||(6472800-6472950)
chr6 (173-231)||(15535242-15535300)
chr6 (13-132)||(16883677-16883797)
chr6 (173-230)||(19664667-19664724)
chr6 (292-456)||(6520324-6520489)
chr6 (182-226)||(15540765-15540809)
chr6 (13-73)||(30978396-30978455)
chr6 (185-232)||(27649300-27649347)
chr6 (176-231)||(32427489-32427544)
chr6 (249-379)||(6528532-6528667)
chr6 (13-59)||(13017387-13017433)
chr6 (253-329)||(6526733-6526810)
chr6 (15-90)||(15540574-15540649)
chr6 (546-590)||(1831932-1831976)
chr6 (13-77)||(22221726-22221789)
chr6 (13-77)||(22247561-22247624)
chr6 (13-63)||(12980686-12980736)
chr6 (13-63)||(12983573-12983623)
chr6 (13-122)||(32427303-32427413)
chr6 (301-365)||(6505830-6505895)
chr6 (56-132)||(11183960-11184037)
chr6 (13-90)||(15535058-15535135)
chr6 (352-396)||(6526688-6526732)
[»] chr7 (17 HSPs)
chr7 (13-122)||(36843071-36843181)
chr7 (13-122)||(9765803-9765913)
chr7 (13-166)||(6967149-6967300)
chr7 (13-166)||(17866446-17866597)
chr7 (13-166)||(24783410-24783561)
chr7 (13-93)||(17863258-17863338)
chr7 (171-231)||(36842937-36842997)
chr7 (173-231)||(24783596-24783654)
chr7 (13-68)||(23313449-23313504)
chr7 (13-77)||(36222489-36222552)
chr7 (12-63)||(3862100-3862151)
chr7 (13-59)||(23759806-23759852)
chr7 (13-90)||(46846479-46846556)
chr7 (13-59)||(294866-294912)
chr7 (185-231)||(9766000-9766046)
chr7 (13-90)||(23107989-23108066)
chr7 (16-86)||(11279496-11279565)
[»] chr1 (17 HSPs)
chr1 (13-166)||(13495989-13496140)
chr1 (13-166)||(10764921-10765072)
chr1 (13-166)||(13493264-13493415)
chr1 (13-122)||(39546244-39546354)
chr1 (13-122)||(27282241-27282351)
chr1 (13-90)||(32506021-32506098)
chr1 (13-122)||(34066346-34066456)
chr1 (173-231)||(13496174-13496232)
chr1 (13-77)||(1936628-1936691)
chr1 (13-90)||(16190345-16190421)
chr1 (176-231)||(39546431-39546486)
chr1 (173-231)||(16190179-16190237)
chr1 (173-231)||(32505857-32505915)
chr1 (134-166)||(32505953-32505985)
chr1 (13-63)||(22456686-22456736)
chr1 (249-347)||(35231149-35231251)
chr1 (13-50)||(49147899-49147936)
[»] chr5 (10 HSPs)
chr5 (13-166)||(14616521-14616672)
chr5 (13-122)||(22159746-22159856)
chr5 (13-166)||(34405850-34406001)
chr5 (13-166)||(7650034-7650185)
chr5 (173-232)||(14616428-14616487)
chr5 (177-235)||(7649938-7649996)
chr5 (14-68)||(11989054-11989108)
chr5 (13-77)||(33575091-33575154)
chr5 (16-73)||(15532385-15532441)
chr5 (16-73)||(15542567-15542623)
[»] chr3 (9 HSPs)
chr3 (13-122)||(13979488-13979598)
chr3 (173-231)||(13979672-13979730)
chr3 (173-231)||(46731641-46731699)
chr3 (13-59)||(11138766-11138812)
chr3 (13-59)||(22626508-22626554)
chr3 (13-77)||(46731496-46731559)
chr3 (171-231)||(26822039-26822099)
chr3 (173-231)||(3306153-3306213)
chr3 (173-231)||(30157797-30157857)
[»] chr2 (13 HSPs)
chr2 (13-122)||(32575819-32575930)
chr2 (173-231)||(23673345-23673403)
chr2 (173-232)||(36327113-36327172)
chr2 (13-90)||(23673511-23673588)
chr2 (185-233)||(16295097-16295145)
chr2 (173-231)||(32575685-32575743)
chr2 (13-130)||(36326928-36327046)
chr2 (13-59)||(16294900-16294946)
chr2 (13-72)||(40017981-40018040)
chr2 (177-231)||(24384925-24384981)
chr2 (16-73)||(31528394-31528450)
chr2 (173-231)||(32074156-32074216)
chr2 (31-90)||(13710091-13710150)
[»] chr4 (7 HSPs)
chr4 (13-166)||(647296-647447)
chr4 (13-164)||(650570-650719)
chr4 (173-231)||(26062690-26062748)
chr4 (13-59)||(11649431-11649477)
chr4 (13-59)||(26060589-26060635)
chr4 (13-122)||(26062825-26062937)
chr4 (173-233)||(15851479-15851539)
[»] scaffold0363 (2 HSPs)
scaffold0363 (13-90)||(174-251)
scaffold0363 (27-66)||(280-319)
[»] chr8 (6 HSPs)
chr8 (13-90)||(14418467-14418544)
chr8 (13-68)||(13097022-13097077)
chr8 (10-68)||(41778930-41778988)
chr8 (13-59)||(41836420-41836466)
chr8 (27-66)||(14418399-14418438)
chr8 (21-90)||(12575466-12575535)
[»] scaffold0567 (1 HSPs)
scaffold0567 (13-68)||(5999-6054)
[»] scaffold0352 (2 HSPs)
scaffold0352 (173-231)||(2619-2677)
scaffold0352 (13-59)||(2801-2847)
[»] scaffold0440 (1 HSPs)
scaffold0440 (13-77)||(9865-9928)
[»] scaffold0264 (1 HSPs)
scaffold0264 (13-77)||(24363-24426)


Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 171 - 591
Target Start/End: Original strand, 1838660 - 1839074
Alignment:
Q  171 ttgtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatcattagcgcatccttttcatcttcatcttcatcttttgtct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||    
T  1838660 ttgtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatcattagcgcatcct------cttcatcttcagcttttgtct 1838753  T
Q  271 aagaaagattgtaatttagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgttgttggtattcatggattttgaaaatcgat 370  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  1838754 aagaaagattgtaattcagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgctgttggtattcatggattttgaaaaccgat 1838853  T
Q  371 catgtttctgtatcttggcattcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctctcttgaaagacgttgaataattgaactcat 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1838854 catgtttctgtatcttggcattcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctctcttgaaagatgttgaataattgaactcat 1838953  T
Q  471 ttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggcattaattttttaaacaagggtctaatatgactggtg 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1838954 ttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggcattaattgtttaaacaagggtctaatatgactggtg 1839053  T
Q  571 ctgatttcgggtttggaattt 591  Q
    |||||||||||||||||||||    
T  1839054 ctgatttcgggtttggaattt 1839074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 1838475 - 1838628
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttattacgtttactttataaaaat 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1838475 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttattacgtttactttataaaaac 1838574  T
Q  113 caatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  1838575 caatccaactgtctaggaaaaatcaatataaatttatacatcctttttgataaa 1838628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 348 - 591
Target Start/End: Original strand, 1822094 - 1822334
Alignment:
Q  348 attcatggattttgaaaatcgatcatgtttctgtatcttggcattcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctctcttgaa 447  Q
    |||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||  |||| ||  |||||||   | ||||||||||||||||| | |||||    
T  1822094 attcatggcttttgaaaatcgatcctgtttccgtaacttggcattcaagcaaaggtgttaaacaagaatc---tcatgaaattgtttcagctattttgaa 1822190  T
Q  448 agacgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggcattaattttttaa 547  Q
    ||| ||||||    ||||||||| |||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  1822191 agatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggctgcaaggttggcattaattctttaa 1822290  T
Q  548 acaagggtctaatatgactggtgctgatttcgggtttggaattt 591  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  1822291 acaagggtctaatatgactggtgctgattttgggttttgaattt 1822334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 238 - 537
Target Start/End: Original strand, 1841591 - 1841892
Alignment:
Q  238 catccttttcatcttcatcttcatcttttgtctaagaaagattgtaat-ttagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcg 336  Q
    |||||| ||||||||||||| || ||||||| |||||||||||||  | ||| ||||||||||||||| |||||||||||| || ||  ||||| ||||     
T  1841591 catcctcttcatcttcatctccagcttttgtataagaaagattgttgtgttactgttttgagttattttaagtataaaagcatttatgcagagcttgtca 1841690  T
Q  337 gtgttgttggt-attcatggattttgaaaatcgatcatgtttctgtatcttggcattcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttc 435  Q
     |||||||||| |||||||||||||||||| |||||||| |||  || ||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||    
T  1841691 atgttgttggtgattcatggattttgaaaaccgatcatgcttccataacttggcattcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttc 1841790  T
Q  436 agctctcttgaaagacgttgaataattgaactcatttgcaataatatcaaattcttcatacttttatggtaaattgattgccagggctgcaaggttggca 535  Q
    |||||| |||||| | ||||||   |||||||||| || ||||| |  ||||||||| ||||||||||||||||  ||||| |||| |||| ||| ||||    
T  1841791 agctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttcttacttttatggtaaatctattgctagggttgcatggtcggca 1841890  T
Q  536 tt 537  Q
    ||    
T  1841891 tt 1841892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 14790620 - 14790771
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  14790620 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 14790718  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  14790719 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 14790771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 14795648 - 14795799
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  14795648 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 14795746  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  14795747 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 14795799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 20527407 - 20527296
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt--attacgtttactttataaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||| |||||| ||| ||||    
T  20527407 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattgtttttatttatgtttacgttacaaaa 20527308  T
Q  111 atcaatccaact 122  Q
    |||||| |||||    
T  20527307 atcaattcaact 20527296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 27649104 - 27649214
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttat-tacgtttactttataaaaa 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || ||||||||  |||||||||    
T  27649104 cataggagaacttcggaggattcgaaggtcttaaccatacttcgctctaattttcttaaaaccaacttttattgtttcatctacgtttatgttataaaaa 27649203  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  27649204 ccaatccaact 27649214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 32704498 - 32704418
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttatt 93  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  32704498 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatt 32704418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 6515867 - 6516002
Alignment:
Q  301 atttcaagtataaaagctttgatcgagagcctgtcggtgttgttggt-attcatggattttgaaaatcgatcatgtttctgtatcttggcattcaagaaa 399  Q
    ||||||||||| ||||| ||||| |||| | ||| |||||||||||| |||||||||||||||||| |||||   |||||||| ||||||||||||| ||    
T  6515867 atttcaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggattttgaaaaccgatccgatttctgtaacttggcattcaagcaa 6515966  T
Q  400 ttgtgtaaatgaagaatctaatgatgaaattgtttc 435  Q
      || |||| ||||||||  ||||||||||||||||    
T  6515967 aggtataaaagaagaatcacatgatgaaattgtttc 6516002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 19664909 - 19664799
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttatt-cttttattacgtttactttataaaaa 111  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||||  ||||| | |||||| |||| ||| |    
T  19664909 cataggagaacttcggaggattcgaaggtcttaaccatacatctctctaattttcttaaaccaaacttttattgtttttaatccgtttattttacaaata 19664810  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  19664809 ccaatccaact 19664799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 306 - 457
Target Start/End: Original strand, 13035513 - 13035665
Alignment:
Q  306 aagtataaaagctttgatcgagagcctgtcggtgttgttggt-attcatggattttgaaaatcgatcatgtttctgtatcttggcattcaagaaattgtg 404  Q
    |||||||||||| ||||| | || | ||| || ||||||||| |||||||| ||||||||| ||||  |||||||||| |||||||| |||| ||  |||    
T  13035513 aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgattctgtttctgtaacttggcatacaagcaaaggtg 13035612  T
Q  405 taaatgaagaatctaatgatgaaattgtttcagctctcttgaaagacgttgaa 457  Q
    |||| ||||||||  ||||  |||||||||||||||| | |||||| ||||||    
T  13035613 taaaagaagaatcacatgacaaaattgtttcagctctttcgaaagatgttgaa 13035665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 6472800 - 6472950
Alignment:
Q  292 ttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgttgttggt-attcatggattttgaaaatcgatcatgtttctgtatcttggca 390  Q
    |||||||  |||| |||||||||||| ||||| | || | ||| || ||||||||| |||||||| |||||||||  |||| ||||||| |  |||||||    
T  6472800 ttttgagggattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggca 6472899  T
Q  391 ttcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctct 441  Q
    |||||| ||  ||||||| ||||||||  |||| |||||||||||||||||    
T  6472900 ttcaagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctct 6472950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 15535242 - 15535300
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  15535242 gtggatacgaatttatttattacttcgataattttggttcacatgcgaaatctccatca 15535300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 16883677 - 16883797
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttatt-cttttattacgtttactttataaaa 110  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||  ||||| | ||||||  ||| ||||    
T  16883677 cataggagaacttcgaaggattcgaatgtcttaaccatacttctctctaattttc-taaaaccaatcttttattgtttttaattcgtttatgttacaaaa 16883775  T
Q  111 atcaatccaactttctagggaa 132  Q
    |||||| |||||  ||||||||    
T  16883776 atcaattcaactgcctagggaa 16883797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 19664724 - 19664667
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatc 230  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19664724 gtggatacaaatttatttattacttcgatagttttggttcacttgccaaatctttatc 19664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 456
Target Start/End: Original strand, 6520324 - 6520489
Alignment:
Q  292 ttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgttgttggt-attcatggattttgaaaatcgatcatgtttctgtatcttggca 390  Q
    |||||||| |||| |||||||||||| ||||| |||| | ||| |||||  ||||| |||||||| |||||||||  |||| |||||||||| |||||||    
T  6520324 ttttgagtgattttaagtataaaagcattgatggagaccttgttggtgtcattggtgattcatggtttttgaaaactgatcctgtttctgtaacttggca 6520423  T
Q  391 ttcaagaaattgtgtaaatgaagaatctaatgatgaaattgtttcagctctcttgaaagacgttga 456  Q
    |||   |||| |||| ||  ||||||   || | |||||||||||||| || |||||||| |||||    
T  6520424 ttcttcaaatggtgttaagaaagaataccataaagaaattgtttcagcacttttgaaagatgttga 6520489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 15540765 - 15540809
Alignment:
Q  182 aatttatttattacttcgataattttggttcacttgccaaatctc 226  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15540765 aatttatttattacttcgatagttttggttcacttgccaaatctc 15540809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 30978455 - 30978396
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaa 73  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  30978455 cataggagagctttggaggattcgaaggacttaaccatacttctctc-aattttcttaaaa 30978396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 27649300 - 27649347
Alignment:
Q  185 ttatttattacttcgataattttggttcacttgccaaatctctatcat 232  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27649300 ttatttattacttcgatagttttagttcacttgccaaatctctatcat 27649347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 32427489 - 32427544
Alignment:
Q  176 gatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    ||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  32427489 gatacaaatttatttattacttcgatagttttggttcacttaccaaatatctatca 32427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 6528667 - 6528532
Alignment:
Q  249 tcttcatcttcatcttttgtctaagaaagattgtaat----ttagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgttgtt 344  Q
    |||||||||||| ||||| ||| |||||||||||||     ||| |||||||||| ||||||||||||||||| ||||| | || | ||| ||  |||||    
T  6528667 tcttcatcttcagcttttatctgagaaagattgtaagaatattactgttttgagtgatttcaagtataaaagcattgatggcgatcttgttggcattgtt 6528568  T
Q  345 ggt-attcatggattttgaaaatcgatcatgtttct 379  Q
    | | |||| |||||||||||||  ||||||||||||    
T  6528567 gctgattcgtggattttgaaaactgatcatgtttct 6528532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 13017433 - 13017387
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  13017433 cataggagagctttggaggattcgaaggacttaaccatacttctctc 13017387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 6526810 - 6526733
Alignment:
Q  253 catcttcatcttttgtctaagaaagattgtaat-ttagtgttttgagttatttcaagtataaaagctttgatcgagag 329  Q
    ||||| || |||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| || ||||| |||||    
T  6526810 catctgcagcttttgtctaagaaagattgtaatgttactgttttgagtgattttaagtataaacgcattgatggagag 6526733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 15540574 - 15540649
Alignment:
Q  15 taggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    ||||||||||| |||||||||||||||||||||||||  ||||| |||| |||| |||   |||||||||| ||||    
T  15540574 taggagaacttcggaggattcgaaggtcttaaccataaatctctttaattttctaaaactaaacttttattgtttt 15540649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 546 - 590
Target Start/End: Original strand, 1831932 - 1831976
Alignment:
Q  546 aaacaagggtctaatatgactggtgctgatttcgggtttggaatt 590  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||    
T  1831932 aaacaagggtctaataatactggtgttgatttcgggtttggaatt 1831976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 22221726 - 22221789
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||| ||| |||||||||||||| ||||||||| |||||||| ||| |||| ||||||||    
T  22221726 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaa 22221789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 22247561 - 22247624
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||| ||| |||||||||||||| ||||||||| |||||||| ||| |||| ||||||||    
T  22247561 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaa 22247624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12980736 - 12980686
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaat 63  Q
    ||||||||||||| |||||||||||||||||| |||||  |||||| ||||    
T  12980736 cataggagaacttcggaggattcgaaggtcttgaccatttttctctttaat 12980686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12983623 - 12983573
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaat 63  Q
    ||||||||||||| |||||||||||||||||| |||||  |||||| ||||    
T  12983623 cataggagaacttcggaggattcgaaggtcttgaccatttttctctttaat 12983573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 32427303 - 32427413
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttatt-cttttattacgtttactttataaaaa 111  Q
    |||||||||||||  |||||||| |||||||||| || || |||||||||| |||| ||| | |||||| |||  ||||| | |||||| |||| ||| |    
T  32427303 cataggagaacttcagaggattcaaaggtcttaatcaaacatctctctaattttctaaaaccaaactttcattgtttttaattcgtttattttacaaata 32427402  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  32427403 ccaatccaact 32427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 6505895 - 6505830
Alignment:
Q  301 atttcaagtataaaagctttgatcgagagcctgtcggtgttgttggt-attcatggattttgaaaa 365  Q
    |||||||||||| |||| ||||| | || | ||| |||||||||||| ||||||||||||||||||    
T  6505895 atttcaagtatacaagcattgatggtgaccttgttggtgttgttggtgattcatggattttgaaaa 6505830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 11184037 - 11183960
Alignment:
Q  56 tctctaatattcttaaaaccaacttttatt-cttttattacgtttactttataaaaatcaatccaactttctagggaa 132  Q
    |||||||| |||| ||||||||||||||||  ||||||||||||||  ||| |||||||||  |||||  ||||||||    
T  11184037 tctctaattttctaaaaaccaacttttattgtttttattacgtttatgttacaaaaatcaactcaactgcctagggaa 11183960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 15535058 - 15535135
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    ||||||| ||||| |||||||| ||||||||||||||||| || || |||| || | ||| | |||||||||| ||||    
T  15535058 cataggaaaacttcggaggatttgaaggtcttaaccatacatcactttaattttgtaaaaccaaacttttattgtttt 15535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 6526732 - 6526688
Alignment:
Q  352 atggattttgaaaatcgatcatgtttctgtatcttggcattcaag 396  Q
    ||||||||||||||  |||| |||||||||| |||||||||||||    
T  6526732 atggattttgaaaacagatcttgtttctgtaacttggcattcaag 6526688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 36843181 - 36843071
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||    
T  36843181 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaatattcataaaaccaacttttattgttttatttacgtttactttataaaaa 36843082  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  36843081 ccaatccaact 36843071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 9765803 - 9765913
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  9765803 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattattttatttatgtttactttataaaaa 9765902  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  9765903 ccaatccaact 9765913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 6967149 - 6967300
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  6967149 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 6967247  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  6967248 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 6967300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 17866597 - 17866446
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  17866597 cataggagaacttcagaggattcgaaggtctaaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 17866499  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     ||   |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  17866498 -cagctcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 17866446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 24783410 - 24783561
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||  ||| ||||     
T  24783410 catatgagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattgttttatttaagtttatgttacaaaa- 24783508  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||  ||| ||||||||||||||||||||||||||||||||||    
T  24783509 -caactcaactgcct-tggacaatcaatataaatttatacatcctttttgataaa 24783561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 17863338 - 17863258
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattcttttatt 93  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  17863338 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatt 17863258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 36842997 - 36842937
Alignment:
Q  171 ttgtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  36842997 ttgtggattcgatcttatttattacttcgataattttggttcacttgccaaatctctatca 36842937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 24783596 - 24783654
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  24783596 gtggatacaaatttatttattacttcgatagttttggttcacttgtcaaatctctatca 24783654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23313504 - 23313449
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattct 68  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  23313504 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaattttct 23313449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 36222552 - 36222489
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||| ||||||||    
T  36222552 cataggagaacttcggaggattcgaaggacttaaccatacttctctc-aatcttctaaaaaccaa 36222489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 3862151 - 3862100
Alignment:
Q  12 gcataggagaactttggaggattcgaaggtcttaaccatacttctctctaat 63  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||    
T  3862151 gcataggagaacttcgaaggattcgaaggtcttaatcatacttctctctaat 3862100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 23759852 - 23759806
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  23759852 cataggagagctttggaggattcgaaggacttaaccatacttctctc 23759806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 46846556 - 46846479
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttattctttt 90  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||| |||||||| ||||    
T  46846556 catagaagaacttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaatcttttattgtttt 46846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 294866 - 294912
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||    
T  294866 cataggagaacttcggaggattcgaaagacttaaccatacttctctc 294912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 9766000 - 9766046
Alignment:
Q  185 ttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||    
T  9766000 ttatttattacttcgatagttttggttaacttgccaaatatctatca 9766046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 23107989 - 23108066
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttattctttt 90  Q
    ||||||||| ||| ||| ||||||||||||||||||| | ||||||||||| ||| ||||||||| |||||||| ||||    
T  23107989 cataggagagcttcggatgattcgaaggtcttaaccacatttctctctaattttc-taaaaccaatcttttattgtttt 23108066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 11279496 - 11279565
Alignment:
Q  16 aggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattc 86  Q
    |||||||||| | | |||||||||| |||||||||||||||||| ||| |||| ||||||||  |||||||    
T  11279496 aggagaacttcgaaagattcgaaggacttaaccatacttctctc-aatcttctaaaaaccaatctttattc 11279565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 13495989 - 13496140
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||  ||| ||||     
T  13495989 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaatcaacttttattgttttatttacgtttatgttacaaaa- 13496087  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||| |||||  ||| ||| ||||||||||||||||||||||||||||||||||    
T  13496088 -caattcaactgccta-ggacaatcaatataaatttatacatcctttttgataaa 13496140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 10764921 - 10765072
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  10764921 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 10765019  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  10765020 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 10765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 13493264 - 13493415
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  13493264 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 13493362  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  13493363 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 13493415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 39546244 - 39546354
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||| ||| |||||    
T  39546244 catatgagaacttcggaggattcgaaggtcttaaccatacttctctctaatatttttaaaaccaacttttattgttttatttgcgtttacgttacaaaaa 39546343  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  39546344 ccaatccaact 39546354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 27282351 - 27282241
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||| |||||||||||||||    
T  27282351 cataggagaacttcggagaattcgaaagtcttaaccatacttctctctaatattcataaaaccaattttaattgttttatttacatttactttataaaaa 27282252  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  27282251 ccaatccaact 27282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 32506098 - 32506021
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  32506098 cataggagaacttcggaggattcgaaggtcttaaccacacttctctataatattcttaaaaccaacttttattgtttt 32506021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 34066346 - 34066456
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttatt-cttttattacgtttactttataaaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||  ||||| | ||||||  ||| ||||    
T  34066346 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaattttc-taaaaccaatcttttattgtttttaattcgtttatgttacaaaa 34066444  T
Q  111 atcaatccaact 122  Q
    |||||| |||||    
T  34066445 atcaattcaact 34066456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 13496174 - 13496232
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  13496174 gtggatacgaatttatttattacttcgatagttttggttcacttgtcaaatctctatca 13496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 1936628 - 1936691
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1936628 cataggagaacttcggaggattcgaaggtcttaaccatacttctctctaattttc-taaaaccaa 1936691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 16190421 - 16190345
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||||||  |||||| ||||    
T  16190421 cataggagaacttcggaggattcgaaggtcttaaccatacttctctttaattttc-taaaaccaatctttattgtttt 16190345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 39546431 - 39546486
Alignment:
Q  176 gatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  39546431 gatacgatcttatttattacttcaataattttggttcacttgccaaatctctatca 39546486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 16190237 - 16190179
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||    
T  16190237 gtggatacgaatttatttattacttcgatagttttgattcacttgtcaaatctccatca 16190179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 32505915 - 32505857
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||    
T  32505915 gtggatacgatcttatttattacttcgatagttttggttcacttgccaaatatctatca 32505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 32505985 - 32505953
Alignment:
Q  134 atcaatataaatttatacatcctttttgataaa 166  Q
    |||||||||||||||||||||||||||||||||    
T  32505985 atcaatataaatttatacatcctttttgataaa 32505953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 22456736 - 22456686
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaat 63  Q
    ||||||||||||| |||||||||||||||||| |||||  |||||| ||||    
T  22456736 cataggagaacttcggaggattcgaaggtcttgaccatttttctctttaat 22456686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 35231149 - 35231251
Alignment:
Q  249 tcttcatcttcatcttttgtctaagaaagattgtaat----ttagtgttttgagttatttcaagtataaaagctttgatcgagagcctgtcggtgttgtt 344  Q
    |||||||||||| ||||| ||| |||| |||||||||    ||| |||||||| | |||| |||||||||||| ||||| | || | ||| |||||||||    
T  35231149 tcttcatcttcagcttttatctgagaatgattgtaataatgttactgttttgaatgattttaagtataaaagcattgatagtgaacttgttggtgttgtt 35231248  T
Q  345 ggt 347  Q
    |||    
T  35231249 ggt 35231251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 49147899 - 49147936
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccat 50  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  49147899 cataggagaacttcggaggattcgaaggtcttgaccat 49147936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 14616672 - 14616521
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||  ||| ||||     
T  14616672 cataggagaacttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaatcaacttttattgttttatttacgtttatgttacaaaa- 14616574  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||| ||||||  |||||||||||||| |||||||||||||||||||    
T  14616573 -caactcaacttcctaggg-taatcaatataaattcatacatcctttttgataaa 14616521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 22159746 - 22159856
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  22159746 cataggagaacttcggaggattcaaaggtcttaaccatatttctctctaatattcttaaaaccaatttttattgttttatttacgtttactttataaaaa 22159845  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  22159846 ccaatccaact 22159856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 34405850 - 34406001
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| | ||     
T  34405850 cataggagaacttcagaggatttgaaggtcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacacaa- 34405948  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  34405949 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 34406001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 7650185 - 7650034
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||| ||||||| | ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||  ||| ||||     
T  7650185 catagaagaacttcgtaggattcaaatgtcttaaccatacttctctctaatattcttaaaagcaacttttattgttttatttacgtttatgttacaaaa- 7650087  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  |||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  7650086 -caactcaactgcctaggg-caatcaatataaatttatacatcctttttgataaa 7650034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 14616487 - 14616428
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatcat 232  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14616487 gtggatacgaatttatttattacttcgatagttttggttcacttgccaaatctctatcat 14616428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 7649996 - 7649938
Alignment:
Q  177 atacgaatttatttattacttcgataattttggttcacttgccaaatctctatcattag 235  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  7649996 atacgaatttatttattacttcgatagttttggttcacttgtcaaatctctatcattag 7649938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11989108 - 11989054
Alignment:
Q  14 ataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattct 68  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  11989108 ataggagaactttggaggattcgaaggtcttaaccttacttctctctaattttct 11989054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 33575091 - 33575154
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||| ||| |||| ||||||||    
T  33575091 cataggagagcttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaa 33575154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15532441 - 15532385
Alignment:
Q  16 aggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaa 73  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| ||| |||||||||    
T  15532441 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaa 15532385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15542623 - 15542567
Alignment:
Q  16 aggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaa 73  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| ||| |||||||||    
T  15542623 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaa 15542567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 13979488 - 13979598
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  13979488 cataggagagcttcggaggattcaaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattgttttatttacgtttactttattaaaa 13979587  T
Q  112 tcaatccaact 122  Q
     ||||||||||    
T  13979588 ccaatccaact 13979598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 13979672 - 13979730
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13979672 gtggattcgattttatttattacttcgatagttttggttcacttgccaaatctctatca 13979730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 46731641 - 46731699
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  46731641 gtggatacaaatttattcattacttcgatagtttttgttcacttgccaaatctctatca 46731699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11138812 - 11138766
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  11138812 cataggagagctttggaggattcgaaggacttaaccatacttctctc 11138766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 22626554 - 22626508
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  22626554 cataggagagctttggaggattcgaaggacttaaccatacttctctc 22626508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 46731496 - 46731559
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    |||| |||||||| |||||||||||||||||||||| ||| |||||||||| ||| |||||||||    
T  46731496 catatgagaacttcggaggattcgaaggtcttaaccttacatctctctaattttc-taaaaccaa 46731559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 26822099 - 26822039
Alignment:
Q  171 ttgtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    ||||||||||||||||  |||||||||||||| ||||||| ||||| |||||  |||||||    
T  26822099 ttgtggatacgaattttattattacttcgatagttttggtacactttccaaaagtctatca 26822039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 3306153 - 3306213
Alignment:
Q  173 gtggatacgaattta-tttattacttcgataatt-ttggttcacttgccaaatctctatca 231  Q
    ||||||||||| ||| ||||||||||||||| || ||||| |||||||||||| |||||||    
T  3306153 gtggatacgaacttaatttattacttcgatagttattggtacacttgccaaatatctatca 3306213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 30157857 - 30157797
Alignment:
Q  173 gtggatacgaattta-tttattacttcgataatt-ttggttcacttgccaaatctctatca 231  Q
    ||||||||||| ||| ||||||||||||||| || ||||| |||||||||||| |||||||    
T  30157857 gtggatacgaacttaatttattacttcgatagttattggtacacttgccaaatttctatca 30157797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 32575930 - 32575819
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttc--tctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaa 109  Q
    ||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  32575930 cataggagagcttcggaggattcgaaggtcttaaccatacttctttctctaatattcttaaaaccaacttttattgttttatttacgtttactttataaa 32575831  T
Q  110 aatcaatccaact 122  Q
    || ||||||||||    
T  32575830 aa-caatccaact 32575819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 23673403 - 23673345
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23673403 gtggatacgaatttatttattacttcgatagttttggttcacttgccaaatctctatca 23673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 36327113 - 36327172
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatcat 232  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  36327113 gtggatacgaatttatttattacttcgatagttttggttcacttgccaaatatctatcat 36327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 23673588 - 23673511
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||| | |||||||||| ||||    
T  23673588 cataggagaacttcggaggattcgaaggtcttaaccatacatctctctaattttctaaaaccaaacttttattgtttt 23673511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 16295097 - 16295145
Alignment:
Q  185 ttatttattacttcgataattttggttcacttgccaaatctctatcatt 233  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16295097 ttatttattacttcgatagttttggttcacttgccaaatctctatcatt 16295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 32575743 - 32575685
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||    
T  32575743 gtggatacgaatttatttattacttcaatagtgttggttcacttgccaaatatctatca 32575685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 36326928 - 36327046
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttatt-cttttattacgtttactttataaaaa 111  Q
    |||| |||||||| ||||||||| |||||||||||||||| |||||||||| |||| ||| | ||||||||||  ||||| | |||||| |||| ||| |    
T  36326928 catatgagaacttcggaggattcaaaggtcttaaccatacatctctctaattttctaaaaccaaacttttattgtttttaatccgtttattttacaaata 36327027  T
Q  112 tcaatccaactttctaggg 130  Q
     ||||| ||||| ||||||    
T  36327028 ccaatctaacttcctaggg 36327046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 16294900 - 16294946
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  16294900 cataggagaacttcggaggattcgaaggacttaaccatacttctctc 16294946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 40017981 - 40018040
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaa 72  Q
    |||||||||  || ||||||||||||||||||||||||||||||||| | | ||||||||    
T  40017981 cataggagagtttcggaggattcgaaggtcttaaccatacttctctcaatttttcttaaa 40018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 24384981 - 24384925
Alignment:
Q  177 atacgaattta--tttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||  ||||||||||||||| ||||||| |||||||||||| |||||||    
T  24384981 atacgaatttaattttattacttcgatagttttggtacacttgccaaatatctatca 24384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 31528394 - 31528450
Alignment:
Q  16 aggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaa 73  Q
    |||||| |||| ||||||||||||| |||||||||||||||||| ||| |||||||||    
T  31528394 aggagagctttagaggattcgaaggacttaaccatacttctctc-aattttcttaaaa 31528450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 32074216 - 32074156
Alignment:
Q  173 gtggatacgaatttatt--tattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||| ||||||||  |||||||||||||||||||||  ||||| ||||| |||||||    
T  32074216 gtggatacaaatttattattattacttcgataattttggtatacttgtcaaatatctatca 32074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 13710091 - 13710150
Alignment:
Q  31 gattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttattctttt 90  Q
    |||| |||||||||||||||||||||||| ||| ||| ||||||||| |||||||| ||||    
T  13710091 gatttgaaggtcttaaccatacttctctcaaattttc-taaaaccaatcttttattgtttt 13710150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 647447 - 647296
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||  ||| ||||     
T  647447 cataggagaacttcagaggattcgaagatcttaaccatacttctctctaatattctgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 647349  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgataaa 166  Q
     |||  ||| |  ||||||  ||||||||||||||||||||||||||||||||||    
T  647348 -caactcaaatgcctaggg-caatcaatataaatttatacatcctttttgataaa 647296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 650719 - 650570
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttta-ttacgtttactttataaaaa 111  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||  ||| ||||     
T  650719 cataggagaacttcagaggattcgaaggtcttaaccatacttctctctaatattatgaaaaccaacttttattgttttatttacgtttatgttacaaaa- 650621  T
Q  112 tcaatccaactttctagggaaaatcaatataaatttatacatcctttttgata 164  Q
     |||  ||| |  ||||||  ||||||||||||||||||||||||||||||||    
T  650620 -caactcaaatgcctaggg-caatcaatataaatttatacatcctttttgata 650570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 26062748 - 26062690
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  26062748 gtggatacgaatttatttattatttcgatagttttggttcacttgccaaatctttatca 26062690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11649477 - 11649431
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  11649477 cataggagaacttcggaggattcgaaggtcttaaccatgcttctctc 11649431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 26060589 - 26060635
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  26060589 cataggagaacttcggaggattcgaaggtcttaaccatgcttctctc 26060635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 26062937 - 26062825
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatac--ttctctctaatattcttaaaaccaacttttatt-cttttattacgtttactttataaa 109  Q
    ||||||||||||| ||||||||| ||||||||||||||||   |||||||||| |||| ||| | ||||||||||  ||||| | |||||| |||| |||    
T  26062937 cataggagaacttcggaggattcaaaggtcttaaccatacatctctctctaattttctaaaaccaaacttttattgtttttaatccgtttattttacaaa 26062838  T
Q  110 aatcaatccaact 122  Q
     | ||||||||||    
T  26062837 taccaatccaact 26062825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 15851479 - 15851539
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatcatt 233  Q
    ||||||||||| ||   ||||||||||||| ||||||| |||||||||||||| |||||||    
T  15851479 gtggatacgaactttactattacttcgatagttttggtacacttgccaaatctttatcatt 15851539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 251 - 174
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  251 cataggagaaattcggaggattcgaatgtcttaaccatacttctctctaatattcttaaaaccaacttttattgtttt 174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 319 - 280
Alignment:
Q  27 ggaggattcgaaggtcttaaccatacttctctctaatatt 66  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  319 ggaggattcgaatgtcttaaccatacttctctctaatatt 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 14418467 - 14418544
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaacttttattctttt 90  Q
    |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14418467 cataggagaaattcggaggattcgaatgtcttaaccatacttctctctaatattcttaaaaccaacttttattgtttt 14418544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 13097022 - 13097077
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattct 68  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  13097022 cataggataacttcggaggattcgaaggtcttaaccatacttctctctaattttct 13097077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 41778988 - 41778930
Alignment:
Q  10 tagcataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattct 68  Q
    |||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| ||||    
T  41778988 tagcataggagaacttcggaagatttgaaggtcttaaccatacttctctttaatcttct 41778930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41836466 - 41836420
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  41836466 cataggagaacttcggaggattcgaaggtcttaaccatgcttctctc 41836420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 14418399 - 14418438
Alignment:
Q  27 ggaggattcgaaggtcttaaccatacttctctctaatatt 66  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  14418399 ggaggattcgaatgtcttaaccatacttctctctaatatt 14418438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 12575535 - 12575466
Alignment:
Q  21 aactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa-cttttattctttt 90  Q
    ||||| ||||||||| | ||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||    
T  12575535 aacttcggaggattcaatggtcttaaccatacttctctctaattttc-taaaaccaatcttttattgtttt 12575466  T

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Target: scaffold0567 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 6054 - 5999
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattct 68  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||    
T  6054 cataggagaacctcggaggattcgaaggtcttaaccatacttctctctaattttct 5999  T

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Target: scaffold0352 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 2677 - 2619
Alignment:
Q  173 gtggatacgaatttatttattacttcgataattttggttcacttgccaaatctctatca 231  Q
    ||||||||||  |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  2677 gtggatacgatcttatttattacttcgatagttttggtccacttgccaaatctccatca 2619  T

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Target: scaffold0352; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 2847 - 2801
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctc 59  Q
    ||||||||| ||| ||||||||| ||||||||||| |||||||||||    
T  2847 cataggagagcttcggaggattcaaaggtcttaacgatacttctctc 2801  T

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Target: scaffold0440 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 9865 - 9928
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||| ||| |||| ||||||||    
T  9865 cataggagagcttcggaggattcgaaggacttaaccatacttctctc-aattttctaaaaaccaa 9928  T

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Target: scaffold0264 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 24426 - 24363
Alignment:
Q  13 cataggagaactttggaggattcgaaggtcttaaccatacttctctctaatattcttaaaaccaa 77  Q
    ||||||||| ||| |||||||||||||| ||||||||| |||||||| ||| |||| ||||||||    
T  24426 cataggagagcttcggaggattcgaaggacttaaccatgcttctctc-aattttctaaaaaccaa 24363  T

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