View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_low_12 (Length: 341)
Name: NF12750_low_12
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_low_12 |
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| [»] scaffold0197 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 21307486 - 21307172
Alignment:
| Q |
20 |
tatggtgcttttactgatctctttatgaataacactggtatttatatgattcaacagggnnnnnnn-gaaggaaatactcattgctaaaagaagaaagaa |
118 |
Q |
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| T |
21307486 |
tatggtgcttttactgatctctttatgaataacactggtatttatatgattcaacagggaaaaaaaagaaggaaatactcattgctaaaagaagaaagaa |
21307387 |
T |
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| Q |
119 |
gaaggttcagctagatgaatcattttccttcaaggcatgtgcattcacatatgataagagcatctgtcgtaaatagaagtatctatgtattgtttagcta |
218 |
Q |
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| T |
21307386 |
gaaggttcagctagatgaatcattttccttcaaggcatgtgcattcacatatgataagagcatctgtcgtaaatagaagtatctatgtattgtttagcta |
21307287 |
T |
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| Q |
219 |
tcataaagcatggatcaacc---ttttcttaatgatattggcaactgtatggtattttagtcattttaaatgtaaatatagttgaccatattaatgtgaa |
315 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21307286 |
tcataaagcatggatcaacctttttttcttaatgatattggcaactgtatggtattttagtcattttaaatgtaaatatagttgaccatattaatgtgaa |
21307187 |
T |
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| Q |
316 |
ttattttagtttcat |
330 |
Q |
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| T |
21307186 |
ttattttagtttcat |
21307172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 20470 - 20578
Alignment:
| Q |
20 |
tatggtgcttttactgatctctttatgaataacactggtatttatatgattcaacaggg-nnnnnnngaaggaaatactcattgctaaaagaagaaagaa |
118 |
Q |
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| T |
20470 |
tatggtgcttttactgatctctttctgaataaaactggtatttatatgattcagcagggaaaaaaaagaaggaaatactcattgctaaaagaagaaagaa |
20569 |
T |
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| Q |
119 |
gaaggttca |
127 |
Q |
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| T |
20570 |
gaaggttca |
20578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 20622 - 20670
Alignment:
| Q |
191 |
atagaagtatctatgtattgtttagctatcataaagcatggatcaacct |
239 |
Q |
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| T |
20622 |
atagaagtatctatgtattgtttagctatcataaagcatggatcaacct |
20670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 20575 - 20606
Alignment:
| Q |
162 |
ttcacatatgataagagcatctgtcgtaaata |
193 |
Q |
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| T |
20575 |
ttcacatatgataagagcatctgtcgtaaata |
20606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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