View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_low_15 (Length: 303)
Name: NF12750_low_15
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_low_15 |
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| [»] scaffold0360 (2 HSPs) |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: scaffold0360 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 15746 - 15588
Alignment:
| Q |
19 |
gaacccaaatccaaaagatttagacacatttacatatattaatgttttcttgttgttggaaatattaagagtaaaaaaccaccgccttgaaagcaaattt |
118 |
Q |
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| T |
15746 |
gaacccaaatccaaaagatttagacacatttacatatattaatgttttgttgttgttggaaatattaagagtaaaaaaccaccgtcttgaaagcaaattt |
15647 |
T |
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| Q |
119 |
tcgatggatcccgatgtaacctaacatctggttttgcttctcaaagtttatacaattgt |
177 |
Q |
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| T |
15646 |
tcggtggacttcgatgtaacctaacatctagttttgcttctcaaagtttatacaattgt |
15588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 15256 - 15143
Alignment:
| Q |
177 |
tatgtctaaactcatgcattcgaggccaaacatgaccaagcttcacaaacaatatccgaaataattgagaataaaatagaaagaatgaacttaatttttg |
276 |
Q |
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| T |
15256 |
tatgtctaaactcatgcactcgagaccaaacatgacgaagcttcacaaacaatatccaaaataattgagaataaaatagaaagcatgaacttaatttttg |
15157 |
T |
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| Q |
277 |
accacccatttgcc |
290 |
Q |
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| T |
15156 |
accacccatttgcc |
15143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 5861257 - 5861080
Alignment:
| Q |
106 |
tgaaagcaaattttcgatggatccc-gatgtaacctaacatctggttttgcttctcaaagtttatacaattgtatgtctaaactcatgcattcgaggcca |
204 |
Q |
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| T |
5861257 |
tgaaagcaaattttcggtggacctttgatgcaacttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaaccaatgcactcgacgcca |
5861158 |
T |
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| Q |
205 |
aacatgaccaagcttcacaaacaatatccgaaataattgagaataaaatagaaagaatgaacttaatttttgaccacc |
282 |
Q |
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| T |
5861157 |
aatataatggagcttcacaaataatgtcctgaataaatgaaagtagaatagaaagtatgaactttatttttgaccacc |
5861080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 5861392 - 5861358
Alignment:
| Q |
19 |
gaacccaaatccaaaagatttagacacatttacat |
53 |
Q |
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| T |
5861392 |
gaacccaaatctaaaagatttagacacatttacat |
5861358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 25617307 - 25617243
Alignment:
| Q |
215 |
agcttcacaaacaatatccgaaataattgagaataaaata-gaaagaatgaacttaatttttgac |
278 |
Q |
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| T |
25617307 |
agcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgac |
25617243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 25678053 - 25677989
Alignment:
| Q |
215 |
agcttcacaaacaatatccgaaataattgagaataaaata-gaaagaatgaacttaatttttgac |
278 |
Q |
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| T |
25678053 |
agcttcacaaacaatgcccaaaataattgagaatagaatataaaataatgaacttgatttttgac |
25677989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 8398 - 8462
Alignment:
| Q |
215 |
agcttcacaaacaatatccgaaataattgagaataaaata-gaaagaatgaacttaatttttgac |
278 |
Q |
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| T |
8398 |
agcttcacaaacaatacccaaaataattgagaatagaatataaaataatgaacttgatttttgac |
8462 |
T |
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