View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12750_low_18 (Length: 286)

Name: NF12750_low_18
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12750_low_18
NF12750_low_18
[»] chr6 (14 HSPs)
chr6 (17-272)||(1839047-1839302)
chr6 (27-272)||(6465107-6465350)
chr6 (20-269)||(6473207-6473454)
chr6 (20-269)||(6526136-6526386)
chr6 (17-131)||(1828181-1828295)
chr6 (91-272)||(1831950-1832129)
chr6 (95-225)||(1827215-1827343)
chr6 (36-257)||(6457156-6457375)
chr6 (35-128)||(1842091-1842184)
chr6 (198-269)||(13035906-13035977)
chr6 (90-192)||(1845886-1845983)
chr6 (207-272)||(1822307-1822372)
chr6 (220-270)||(1827156-1827206)
chr6 (29-105)||(6505256-6505332)
[»] chr7 (3 HSPs)
chr7 (171-254)||(3754007-3754092)
chr7 (169-241)||(46383329-46383403)
chr7 (200-268)||(4046177-4046245)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 1839302 - 1839047
Alignment:
Q  17 ctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||    
T  1839302 ctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagacacatgtaattagagttcgaatttctacttg 1839203  T
Q  117 aggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgtgcactgcaattcaatagagaaac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1839202 aggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgtgcactgcaattcattagagaaac 1839103  T
Q  217 tatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcaccagt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1839102 tatcctaaatgataatgatgctcatcataaattccaaacccgaaatcagcaccagt 1839047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 272
Target Start/End: Original strand, 6465107 - 6465350
Alignment:
Q  27 cgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttgaggtcataaa 126  Q
    ||||||| |||| |||||||||||| || || |||||| ||||||| |||||||||||| | |||||||| |||||||  ||||| ||  || |||||||    
T  6465107 cgaactcagttaaccctccggcccacgaatgcaatttaaaaagatcgaaacaccttagacgggtgtaattcgagttcggatttctgctcaagttcataaa 6465206  T
Q  127 atttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgt--gcactgcaattcaatagagaaactatcctaa 224  Q
    ||  || ||||||||||| | ||||||||||     | ||  ||||||||||||||||||||||||   |||| ||||||| ||||||||| ||||||||    
T  6465207 atcagccatgagtgaataagcttgaggcttat----acttcctaccccaaattggatcaatctttgcaagcacagcaattccatagagaaagtatcctaa 6465302  T
Q  225 atgataatgatgctcatcataaattccaaacccgaagtcagcaccagt 272  Q
    |||||||||||| |||| ||||| ||| || || || |||||||||||    
T  6465303 atgataatgatgatcattataaactccgaatccaaaatcagcaccagt 6465350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 6473454 - 6473207
Alignment:
Q  20 ccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttgagg 119  Q
    ||||| || ||||| |||| ||||||||||||||| || | ||| |||||||| |||||||||| | | || ||||| || ||||||||| | ||  |||    
T  6473454 ccatccgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacaccttaaaggagtataatttgaattcgagtttttgctcaagg 6473355  T
Q  120 tcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgt--gcactgcaattcaatagagaaact 217  Q
    ||||||||| | | ||||||| ||||| ||||||||||     ||||  ||||||||| |||||||||||| |   |||||||||||| ||||||||| |    
T  6473354 tcataaaatcttccatgagtgcataggcttgaggcttat----atttcttaccccaaactggatcaatcttagcaagcactgcaattccatagagaaagt 6473259  T
Q  218 atcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcacc 269  Q
    | ||||||||||||||||| |||| ||||||||| |||||||| ||||||||    
T  6473258 aacctaaatgataatgatgatcattataaattccgaacccgaaatcagcacc 6473207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 6526136 - 6526386
Alignment:
Q  20 ccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaat---tagagttcgagtttctacttg 116  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||   ||| ||| || ||||| ||      
T  6526136 ccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacaccttagatgcgtgtaataactagggtttgaatttctgctca 6526235  T
Q  117 aggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttg--tgcactgcaattcaatagagaa 214  Q
       |||||||||  || ||||  ||||||| |||||    | ||| | ||| |||||||||| ||||||||||| |   |||||||||||| ||||||||    
T  6526236 gattcataaaatcagccatgacagaataggcttgag----acttatactttctaccccaaataggatcaatcttagcaagcactgcaattccatagagaa 6526331  T
Q  215 actatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcacc 269  Q
    | |||||||||||||||||||| |||| ||||| ||| ||||| || ||||||||    
T  6526332 agtatcctaaatgataatgatgatcattataaactccgaacccaaaatcagcacc 6526386  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 1828295 - 1828181
Alignment:
Q  17 ctaccatcagcgaactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttg 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||  ||||||||||  ||| |||||||||||      
T  1828295 ctaccatcagcgaattctgttagccctccggcccaagagtgtaatttataaagatcgaaacacctcagacacgtgtaattattgttagagtttctactca 1828196  T
Q  117 aggtcataaaatttg 131  Q
    ||||||  |||||||    
T  1828195 aggtcagcaaatttg 1828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 1832129 - 1831950
Alignment:
Q  91 gtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctt 190  Q
    |||||| ||||| || ||||||||  ||||||||||||   ||||||||||||||| ||||||||||     | | | ||||||||||||||||||||||    
T  1832129 gtaatttgagtttgaatttctactcaaggtcataaaatcctcaatgagtgaataggcttgaggcttat----actctctaccccaaattggatcaatctt 1832034  T
Q  191 tgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcaccagt 272  Q
    ||   |||||||||||| | ||||||| |||||||||||||||||||| || | || ||||||||||||||| ||| |||||||    
T  1832033 tgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatggtcgttattaattccaaacccgaaatcaacaccagt 1831950  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 1827343 - 1827215
Alignment:
Q  95 ttagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgt- 193  Q
    ||||||||||| |||||||| |||||||||||||  |||||||||||||||| ||||||||||     ||||| |||||||||||| |||||||||||      
T  1827343 ttagagttcgaatttctactcgaggtcataaaatcggcaatgagtgaataggcttgaggcttat----attttctaccccaaattgaatcaatctttgca 1827248  T
Q  194 -gcactgcaattcaatagagaaactatcctaaa 225  Q
     |||||||||||| ||||||||| |||||||||    
T  1827247 agcactgcaattcgatagagaaagtatcctaaa 1827215  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 257
Target Start/End: Original strand, 6457156 - 6457375
Alignment:
Q  36 ttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttgaggtcataaaatttgcaat 135  Q
    |||| ||||| |||||||| || |||||||||||||| |||||||||| | | || ||||| ||||| || ||||| | | || |||  |||| ||| ||    
T  6457156 ttagtcctccagcccaagaatgaaatttataaagatcgaaacaccttaaacgtgtataatttgagtttgattttcttcctaagttcaggaaatctgccat 6457255  T
Q  136 gagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatg 233  Q
    ||||||||| | |||||| |||     | ||| | ||||||  ||||||||||||||   |||||||||||| ||||||||| |||||||||||||||||    
T  6457256 gagtgaataagcttgaggtttat----actttcttccccaagctggatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatg 6457351  T
Q  234 atgctcatcataaattccaaaccc 257  Q
    ||| |||| |||||| || |||||    
T  6457352 atgatcattataaataccgaaccc 6457375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 1842184 - 1842091
Alignment:
Q  35 gttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcgagtttctacttgaggtcataaaat 128  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||||||||  ||||| ||||||||| || ||||||||  ||||||||||||    
T  1842184 gttagccctccagctcaagagtgtaatttacaaagatcgaaacaccttagacacgtgtcattagagtttgaatttctactcaaggtcataaaat 1842091  T

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Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 13035977 - 13035906
Alignment:
Q  198 tgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcacc 269  Q
    |||||||| ||||||||| || ||||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  13035977 tgcaattccatagagaaagtaacctaaatgataatgatggtcattataaattccaaacccgaaatcagcacc 13035906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 1845983 - 1845886
Alignment:
Q  90 tgtaattagagttcgagtttctacttgaggtcataaaatttgcaatgagtgaataggtttgaggcttaattaaattttataccccaaattggatcaatct 189  Q
    ||||||||||||| || ||||||||  |||||||||||| |||||||||| |||||| |||||||    |||||||||  ||||||||||||||||||||    
T  1845983 tgtaattagagtttgaatttctactc-aggtcataaaatctgcaatgagtaaataggcttgaggc----ttaaattttccaccccaaattggatcaatct 1845889  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 1822372 - 1822307
Alignment:
Q  207 atagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcaccagt 272  Q
    ||||||||| ||| |||||||||||||||| |||| |||||||| |||||| || |||||||||||    
T  1822372 atagagaaagtattctaaatgataatgatggtcattataaattcaaaacccaaaatcagcaccagt 1822307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 1827206 - 1827156
Alignment:
Q  220 cctaaatgataatgatgctcatcataaattccaaacccgaagtcagcacca 270  Q
    ||||||||||||||||| || | |||||||||||||||||| |||||||||    
T  1827206 cctaaatgataatgatggtcgttataaattccaaacccgaaatcagcacca 1827156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 6505256 - 6505332
Alignment:
Q  29 aactctgttagccctccggcccaagagtgtaatttataaagatctaaacaccttagatgcgtgtaattagagttcga 105  Q
    ||||| ||||||||||||||||| || || || || |||||||| |||||||||| | |||| ||||| ||||||||    
T  6505256 aactcggttagccctccggcccacgaatgcaacttgtaaagatcgaaacaccttaaacgcgtataatttgagttcga 6505332  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 3754092 - 3754007
Alignment:
Q  171 ccccaaattggatcaatctttgt--gcactgcaattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaa 254  Q
    ||||||| ||||||||||||||   | || ||||||| ||| ||||| || ||||||||||||||||| |||| ||||||||||||    
T  3754092 ccccaaaatggatcaatctttgcaagaacagcaattccataaagaaaataacctaaatgataatgatgatcattataaattccaaa 3754007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 46383329 - 46383403
Alignment:
Q  169 taccccaaattggatcaatctttgtg--cactgcaattcaatagagaaactatcctaaatgataatgatgctcat 241  Q
    |||||||||| ||||||||||| | |  ||||| ||||| ||||||| | |||||||||||||||||||| ||||    
T  46383329 taccccaaataggatcaatcttggcgagcactgtaattccatagagagaatatcctaaatgataatgatgatcat 46383403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 4046177 - 4046245
Alignment:
Q  200 caattcaatagagaaactatcctaaatgataatgatgctcatcataaattccaaacccgaagtcagcac 268  Q
    |||||| ||| ||||| || ||||||||||||||||| |||| ||| |||||||| || || |||||||    
T  4046177 caattccataaagaaaataacctaaatgataatgatgatcattatacattccaaaaccaaaatcagcac 4046245  T

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