View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_low_20 (Length: 248)
Name: NF12750_low_20
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13922621 - 13922385
Alignment:
| Q |
1 |
agcttgtggtgcagaatggtccaattgcctgattggtatgtaaaaataatattgctaaaacgtgaatttaagagtataatatttgtgatcttggtgtaaa |
100 |
Q |
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| T |
13922621 |
agcttgtggtgcagaatagtccaattgcctgattggtatgtaaaaata---ttgctaaaacgtgaattttagagtataatatttgtgatcttggtgtaaa |
13922525 |
T |
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| Q |
101 |
ttccaaatatattttgaaaataacttatttttcagaataattacaaatattttctctatttttcgtatattctcctacgaataaataaattattctaaaa |
200 |
Q |
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| T |
13922524 |
ttccaaatatattttgaaaataacttatttttcagaataattacaaatattttctctatttttcgtatattctcctacgaataaataaattattctaaaa |
13922425 |
T |
|
| Q |
201 |
ttcaaatgattatatttttctcatgcaaacaattcatctc |
240 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| |
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| T |
13922424 |
ttcaaatgattatatttttctcatacaaacgattcatctc |
13922385 |
T |
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