View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_low_4 (Length: 483)
Name: NF12750_low_4
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Original strand, 4358734 - 4359187
Alignment:
| Q |
20 |
atgaatgcatcagcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtcc |
119 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4358734 |
atgaatgcatcggcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtcc |
4358833 |
T |
|
| Q |
120 |
gtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtc |
219 |
Q |
| |
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||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4358834 |
ttccaaatccgggaagtgccggggaagcttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtc |
4358933 |
T |
|
| Q |
220 |
gtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactca |
319 |
Q |
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||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
4358934 |
gtcttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactca |
4359033 |
T |
|
| Q |
320 |
tactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcga |
419 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359034 |
tactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcga |
4359133 |
T |
|
| Q |
420 |
gcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359134 |
gcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
4359187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 4353536 - 4353084
Alignment:
| Q |
20 |
atgaatgcatcagcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtcc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4353536 |
atgaatgcatcggcagccttgtccacctcggcgtcggcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtcc |
4353437 |
T |
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| Q |
120 |
gtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtc |
219 |
Q |
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||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4353436 |
ttccaaatccgggaagtgccggggaagcttcgacaattacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtc |
4353337 |
T |
|
| Q |
220 |
gtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactca |
319 |
Q |
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||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
4353336 |
gtcttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactca |
4353237 |
T |
|
| Q |
320 |
tactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcga |
419 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4353236 |
tactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaa |
4353137 |
T |
|
| Q |
420 |
gcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
473 |
Q |
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|||| | |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4353136 |
gctt-ctacggcgtttgaccatcatgttgaggtccatcattagttttccctttg |
4353084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 96 - 473
Target Start/End: Complemental strand, 4350083 - 4349697
Alignment:
| Q |
96 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
195 |
Q |
| |
|
|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
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| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
196 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
286 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
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| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
287 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
386 |
Q |
| |
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||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
387 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttg |
4349697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 473
Target Start/End: Original strand, 43475430 - 43475556
Alignment:
| Q |
353 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
446 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
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| Q |
447 |
tgaggtccatcattagttttccctttg |
473 |
Q |
| |
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| ||| ||||||||||||| ||||||| |
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| T |
43475530 |
ttaggcccatcattagtttgccctttg |
43475556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 43486106 - 43486175
Alignment:
| Q |
404 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttg |
473 |
Q |
| |
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|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| ||||||||||||| |
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| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttg |
43486175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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