View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12750_low_6 (Length: 414)

Name: NF12750_low_6
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12750_low_6
NF12750_low_6
[»] chr5 (3 HSPs)
chr5 (102-395)||(1554668-1554961)
chr5 (221-281)||(9102340-9102400)
chr5 (1-37)||(1554567-1554603)
[»] chr7 (2 HSPs)
chr7 (195-277)||(46135137-46135219)
chr7 (201-278)||(37587445-37587522)
[»] chr6 (2 HSPs)
chr6 (196-277)||(8001323-8001404)
chr6 (210-268)||(20473497-20473555)
[»] chr3 (3 HSPs)
chr3 (201-277)||(35188962-35189038)
chr3 (210-278)||(3861149-3861217)
chr3 (221-266)||(49019534-49019579)
[»] chr1 (2 HSPs)
chr1 (202-278)||(5242587-5242663)
chr1 (197-268)||(37306352-37306423)
[»] chr2 (5 HSPs)
chr2 (197-276)||(13467436-13467515)
chr2 (201-279)||(4639991-4640069)
chr2 (201-278)||(34099066-34099143)
chr2 (210-277)||(9483989-9484056)
chr2 (201-276)||(13464697-13464772)
[»] chr4 (4 HSPs)
chr4 (198-278)||(50091279-50091359)
chr4 (201-281)||(36280262-36280342)
chr4 (213-275)||(11942579-11942641)
chr4 (204-252)||(10065288-10065336)
[»] chr8 (4 HSPs)
chr8 (214-276)||(15311441-15311503)
chr8 (214-276)||(15491810-15491872)
chr8 (203-268)||(15282133-15282198)
chr8 (203-268)||(15462502-15462567)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 102 - 395
Target Start/End: Original strand, 1554668 - 1554961
Alignment:
Q  102 cgtatataatgtgctttacgactagtggtatactgattttgtaaagtctgaaataatagtcgtatctatcttatttatatagtgagaaaattaatcaaca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1554668 cgtatataatgtgctttacgactagtggtatactgattttgtaaagactgaaataatagtcgtatctatcttatttatatagtgagaaaattaatcaaca 1554767  T
Q  202 agctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaattattcnnnnnnnnattcagtt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| ||    
T  1554768 agctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaattattattttttttattcaatt 1554867  T
Q  302 atatttttgtcacttctcgtgcaatactcagacacaacattttcactatattatgatgaatgaacaatgaatatgaatttacacatataattac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1554868 atatttttgtcacttctcgtgcaatactcagacacaacattttcactatattatgatgaatgaacaatgaatatgaatttacacatataattac 1554961  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 9102340 - 9102400
Alignment:
Q  221 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102340 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaatt 9102400  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1554567 - 1554603
Alignment:
Q  1 atttaaccacgtaagtaaggcatgttctcagaggaat 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  1554567 atttaaccacgtaagtaaggcatgttcttagaggaat 1554603  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 46135137 - 46135219
Alignment:
Q  195 atcaacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46135137 atcaacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 46135219  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 37587522 - 37587445
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 278  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  37587522 aagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 37587445  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 8001323 - 8001404
Alignment:
Q  196 tcaacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8001323 tcaactagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 8001404  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 20473555 - 20473497
Alignment:
Q  210 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20473555 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 20473497  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 35188962 - 35189038
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35188962 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 35189038  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 3861217 - 3861149
Alignment:
Q  210 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  3861217 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 3861149  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 49019579 - 49019534
Alignment:
Q  221 gttagagcacccgtttagtaagcgggaggtcttgagttcaactctc 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  49019579 gttagagcacctgtttagtaagcgggaggtcttgagttcaactctc 49019534  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 5242587 - 5242663
Alignment:
Q  202 agctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242587 agctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 5242663  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 37306352 - 37306423
Alignment:
Q  197 caacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 268  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37306352 caacaagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 37306423  T

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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 13467515 - 13467436
Alignment:
Q  197 caacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 276  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13467515 caaccagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 13467436  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 4640069 - 4639991
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaa 279  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4640069 aagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaa 4639991  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 34099066 - 34099143
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 278  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  34099066 aagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaa 34099143  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 9484056 - 9483989
Alignment:
Q  210 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  9484056 tagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaa 9483989  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 13464772 - 13464697
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 276  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| | ||||||||||    
T  13464772 aagctcttgtagctcagttggttagagcacttgtttagtaagcgggaggtcttgaattcaacttttaacgagagca 13464697  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 50091279 - 50091359
Alignment:
Q  198 aacaagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 278  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50091279 aacatgctctcgtagctcagttggttagagcacctgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaa 50091359  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 36280262 - 36280342
Alignment:
Q  201 aagctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagcaaaatt 281  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  36280262 aagctttcatagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaatgaaagcaaaatt 36280342  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 11942641 - 11942579
Alignment:
Q  213 ctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagc 275  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  11942641 ctcagttggttagatcacccgtttagtaagcgggacgtcttgagttcgactctcaacgagagc 11942579  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 10065288 - 10065336
Alignment:
Q  204 ctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtct 252  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10065288 ctctcgtagctcatttggttagagcacccgtttagtaagcgggaggtct 10065336  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 15311503 - 15311441
Alignment:
Q  214 tcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 276  Q
    |||||||||||||| | ||||||| | |||| ||||| |||| ||||||||||||||||||||    
T  15311503 tcagttggttagagaatccgtttaatgagcgagaggttttgaattcaactctcaacgagagca 15311441  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 15491872 - 15491810
Alignment:
Q  214 tcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaacgagagca 276  Q
    |||||||||||||| | ||||||| | |||| ||||| |||| ||||||||||||||||||||    
T  15491872 tcagttggttagagaatccgtttaatgagcgagaggttttgaattcaactctcaacgagagca 15491810  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 15282198 - 15282133
Alignment:
Q  203 gctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 268  Q
    ||||| |||| |||||||||||||||||  ||||| |||  ||||||| |||| ||||||||||||    
T  15282198 gctctggtagttcagttggttagagcacttgtttaataaatgggaggttttgaattcaactctcaa 15282133  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 15462567 - 15462502
Alignment:
Q  203 gctctcgtagctcagttggttagagcacccgtttagtaagcgggaggtcttgagttcaactctcaa 268  Q
    ||||| |||| |||||||||||||||||  ||||| |||  ||||||| |||| ||||||||||||    
T  15462567 gctctggtagttcagttggttagagcacttgtttaataaatgggaggttttgaattcaactctcaa 15462502  T

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