View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12750_low_8 (Length: 397)
Name: NF12750_low_8
Description: NF12750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12750_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 42347536 - 42347212
Alignment:
| Q |
18 |
aatttaaatagagaatagacaccaaaaaatgcataacactggagcaagaaagttgggtttgaaagttattactttcagctagtatgcaatttttaatcta |
117 |
Q |
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| T |
42347536 |
aatttaaatggagaatacacaccaaaaaatgcataacaccggagcaagaaagttgggtttgaaagttattactttcagctagtatgcaattttttatcta |
42347437 |
T |
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| Q |
118 |
acaagtttgtcataattttatttcaactaaatttgtcatacatcatcaaagagtgaaagttattacatgtctatgttgtagtgggtaagataaatctatt |
217 |
Q |
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| T |
42347436 |
acaagtttgtcataattttatttcaactaaatttgtcatacatcatcgaagagtgagagttattacatgtctatgttgtagtgggtaagataaatctatt |
42347337 |
T |
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| Q |
218 |
cttcattgcctcgtcctttgtcagcggtttgttgaagtgtggtttgggtgtggattccccaacgtgtcttcgttgtgcgctaatacacttttgagtaata |
317 |
Q |
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| T |
42347336 |
cttcattgcctcgtcct---tcagcggtttgttgaagtgtggtttgggtgtggattccccaacgtgtcttcgttgtgcgctaatacacttttgagtaata |
42347240 |
T |
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| Q |
318 |
tcaaagatataatacaaatgttaattag |
345 |
Q |
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| T |
42347239 |
tcagagatataatacaaatgttaattag |
42347212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 375
Target Start/End: Original strand, 32331369 - 32331560
Alignment:
| Q |
184 |
atgtctatgttgtagtgggtaagataaatctattcttcattgcctcgtcctttgtcagcggtttgttgaagtgtggtttgggtgtggattccccaacgtg |
283 |
Q |
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| T |
32331369 |
atgtccatgttgtaatcggaaagatgaatctattcctcattgcctcatcctttgtccgcgagctgttgcagtgtggtctggatgtgaattccctaacgtg |
32331468 |
T |
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| Q |
284 |
tcttcgttgtgcgctaatacacttttgagtaatatcaaagatataatacaaatgttaattagtaacattaaaagtgtctcccctatcataat |
375 |
Q |
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| T |
32331469 |
tcttctttgtgcattaataatccttcgagtaatatgagagatatcatacaaatgttattaagtaagataggaagtgtcgcccctattataat |
32331560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 32926023 - 32925811
Alignment:
| Q |
127 |
tcataattttatttcaactaaatttgtcatacatcatcaaagagtgaaagtt---attacatgtctatgttgtagtgggtaagataaatctattcttcat |
223 |
Q |
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| T |
32926023 |
tcataattctattccaactaaatatgtctcgcaccatcaaagggtgaatgtttctactacatgtccatgatgtaacgaggaagatgaatctattcttcat |
32925924 |
T |
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| Q |
224 |
tgcctcgtcctttgtcagcggtttgttgaagtgtggtttgggtgtggattccccaacgtgtcttcgttgtgcgctaatacacttttgagtaatatcaaag |
323 |
Q |
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| T |
32925923 |
tgcctcatcctttgtctgcgagctgttgtagtgtggtcttgatgtagattccctaatgtgtcttcattgcgcgctaataatccttcgagtaatatgaaag |
32925824 |
T |
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| Q |
324 |
atataatacaaat |
336 |
Q |
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|||| |||||||| |
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| T |
32925823 |
atatcatacaaat |
32925811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 33928541 - 33928639
Alignment:
| Q |
204 |
aagataaatctattcttcattgcctcgtcctttgtcagcggtttgttgaagtgtggtttgggtgtggattccccaacgtgtcttcgttgtgcgctaata |
302 |
Q |
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| T |
33928541 |
aagatgaatctattcctcattgcctcatcctttgtctgcgagctgttgtaatgtggtctggatgtggattaccctacgtgtcttcattgtgcgctaata |
33928639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 37501657 - 37501771
Alignment:
| Q |
181 |
tacatgtctatgttgtagtgggtaagataaatctattcttcattgcctcgtcctttgtcagcggtttgttgaagtgtggtttgggtgtggattccccaac |
280 |
Q |
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| T |
37501657 |
tacatgtccatgttgtaacgaggaagatgaatatattcttcattgccccatcctttgtccacgagttgttgcagcgtggtctggatgtggcttccccaat |
37501756 |
T |
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| Q |
281 |
gtgtcttcgttgtgc |
295 |
Q |
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| T |
37501757 |
gtgtcttcattgtgc |
37501771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 36284164 - 36284212
Alignment:
| Q |
296 |
gctaatacacttttgagtaatatcaaagatataatacaaatgttaatta |
344 |
Q |
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| T |
36284164 |
gctaataatcttttgagtaatattagagatatcatacaaatgttaatta |
36284212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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