View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12751_high_12 (Length: 244)
Name: NF12751_high_12
Description: NF12751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12751_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 47197597 - 47197817
Alignment:
| Q |
22 |
atagcaccaacaagaatacgtggagcacttaacattatgtttcagctgaacattaccataggaattttcatagcaaacctcgtcaactggtttacatcaa |
121 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47197597 |
atagcaccaacaagaattcgtggagcacttaacattatgtttcagctgaatattaccataggaattttcatagcaaaccttgtcaactggtttacatcaa |
47197696 |
T |
|
| Q |
122 |
agtaagttaaatttgattattaatattcgtaataacatttttaactaagtaaatattttgaactataatgtaataactgtttatattggaaaacagaatc |
221 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197697 |
agtaagttaaatttgattaataatattcgtaataacatttttaactaagtaaatattttgaactataatgtaataactgtttatattggaaaacagaatc |
47197796 |
T |
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| Q |
222 |
aaaggtggatatgggtggaga |
242 |
Q |
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||||||||||||||||||||| |
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| T |
47197797 |
aaaggtggatatgggtggaga |
47197817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 47184718 - 47184935
Alignment:
| Q |
22 |
atagcaccaacaagaatacgtggagcacttaacattatgtttcagctgaacattaccataggaattttcatagcaaacctcgtcaactggtttacatcaa |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47184718 |
atagcaccaacaagaattcgtggagcacttaacattatgtttcagctgaacattaccataggaattttcatagcaaaccttgtcaactggtttacatcaa |
47184817 |
T |
|
| Q |
122 |
agtaagttaaatttgattattaatattcgtaataacatttttaactaagtaaatattttgaactataatgtaataactgtttatattggaaaacagaatc |
221 |
Q |
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||||||||||||||||||| |||| ||| |||||||| |||||| ||| | || | |||||| || | |||||| |||||||| || |||||||||| |
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| T |
47184818 |
agtaagttaaatttgattaataatcttcataataaca-ttttaattaattgaaaactttgaa-tagtctataataattgtttata-tgaaaaacagaatg |
47184914 |
T |
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| Q |
222 |
aaaggtggatatgggtggaga |
242 |
Q |
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|||||||||||||||||||| |
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| T |
47184915 |
gaaggtggatatgggtggaga |
47184935 |
T |
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